RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254781148|ref|YP_003065561.1| hypothetical protein
CLIBASIA_05275 [Candidatus Liberibacter asiaticus str. psy62]
         (69 letters)



>3gxv_A Replicative DNA helicase; hexameric helicase, primase,
          replication, ATP-binding, autocatalytic cleavage, DNA
          replication; 2.20A {Helicobacter pylori} PDB: 3gxv_D
          3gxv_C (A:)
          Length = 123

 Score = 36.0 bits (83), Expect = 0.002
 Identities = 8/44 (18%), Positives = 20/44 (45%), Gaps = 1/44 (2%)

Query: 21 IGLEQEILGSLLLKGN-LQPIISFLDAQHFIDPIHSEVFRAITR 63
            +E+ +L  ++L  + ++ + S L+   F  P +   F    +
Sbjct: 11 QNIERIVLSGIVLANHKIEEVHSVLEPSDFYYPPNGLFFEIALK 54


>2r5u_A Replicative DNA helicase; DNAB, primase, replication,
          ATP-binding, autocatalytic cleavage, DNA replication,
          DNA-binding, endonuclease; 1.90A {Mycobacterium
          tuberculosis} (A:)
          Length = 200

 Score = 35.4 bits (81), Expect = 0.003
 Identities = 13/47 (27%), Positives = 21/47 (44%), Gaps = 1/47 (2%)

Query: 19 YFIGLEQEILGSLLLKGN-LQPIISFLDAQHFIDPIHSEVFRAITRK 64
            +  EQ +LG +LL  + +  ++  L    F  P H  V+ AI   
Sbjct: 29 QDLAAEQSVLGGMLLSKDAIADVLERLRPGDFYRPAHQNVYDAILDL 75


>2r6a_A DNAB helicase, replicative helicase; replication, DNAB;
          2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A
          2r6d_A 2r6e_A 2vyf_A 2vye_A (A:1-155)
          Length = 155

 Score = 35.0 bits (80), Expect = 0.004
 Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 1/46 (2%)

Query: 19 YFIGLEQEILGSLLLKGN-LQPIISFLDAQHFIDPIHSEVFRAITR 63
            I  EQ +LG++ L    L P    L  + F    H ++F A+ R
Sbjct: 12 QSIEAEQAVLGAVFLDPAALVPASEILIPEDFYRAAHQKIFHAMLR 57


>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A
          {Bacillus phage SPP1} (A:1-154)
          Length = 154

 Score = 32.7 bits (74), Expect = 0.018
 Identities = 11/44 (25%), Positives = 18/44 (40%), Gaps = 1/44 (2%)

Query: 21 IGLEQEILGSLLLKGNLQPIISFLDAQHFIDPIHSEVFRAITRK 64
             EQ +LGS+L +  L      L  +HF    H  ++  +   
Sbjct: 15 EYAEQAVLGSILTEPELIKEC-PLTPEHFSPGKHFNIYFTMQDL 57


>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus
          aquaticus} (A:1-152)
          Length = 152

 Score = 31.9 bits (72), Expect = 0.033
 Identities = 11/45 (24%), Positives = 22/45 (48%), Gaps = 2/45 (4%)

Query: 21 IGLEQEILGSLLLKGN-LQPIISFLD-AQHFIDPIHSEVFRAITR 63
          +  EQ +LGS+LL  + +  +   L   + F    H +++ A+  
Sbjct: 10 LEAEQSVLGSILLDSDVMDEVEGLLPSPEAFYAEAHRKIYAAMQA 54


>1b79_A DNAB helicase; hexamer, DNA replication; 2.30A
          {Escherichia coli} (A:)
          Length = 119

 Score = 30.3 bits (68), Expect = 0.087
 Identities = 11/41 (26%), Positives = 17/41 (41%), Gaps = 1/41 (2%)

Query: 24 EQEILGSLLLKGN-LQPIISFLDAQHFIDPIHSEVFRAITR 63
          EQ +LG L+L       +   + A  F    H  +F  + R
Sbjct: 24 EQSVLGGLMLDNERWDDVAERVVADDFYTRPHRHIFTEMAR 64


>2wsc_2 LHCA2, type II chlorophyll A/B binding protein from
           photosystem I; photosynthesis, electron transfer,
           membrane proteins, large complexes; HET: CL1 PQN BCR LMU
           LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_2* 2wsf_2*
           2o01_2* (2:)
          Length = 269

 Score = 26.5 bits (57), Expect = 1.2
 Identities = 6/26 (23%), Positives = 8/26 (30%)

Query: 38  QPIISFLDAQHFIDPIHSEVFRAITR 63
              I  L A H  DP  +       +
Sbjct: 244 TGPIDNLFAAHLADPHATIFAAFTPK 269


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.323    0.140    0.403 

Gapped
Lambda     K      H
   0.267   0.0625    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 491,048
Number of extensions: 16232
Number of successful extensions: 27
Number of sequences better than 10.0: 1
Number of HSP's gapped: 23
Number of HSP's successfully gapped: 7
Length of query: 69
Length of database: 4,956,049
Length adjustment: 36
Effective length of query: 33
Effective length of database: 3,739,069
Effective search space: 123389277
Effective search space used: 123389277
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 50 (23.3 bits)