HHsearch alignment for GI: 254781149 and conserved domain: CHL00095
>CHL00095 clpC Clp protease ATP binding subunit.
Probab=95.32 E-value=0.28 Score=29.08 Aligned_cols=126 Identities=19% Similarity=0.281 Sum_probs=74.3
Q ss_pred HHHHHHHHHH--CCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCC-----EEEECCCCCHH--------HHHHHHHHHHH
Q ss_conf 7777765530--168368870687414889999999996302232-----36411675348--------99999999630
Q gi|254781149|r 130 QSVDHLMGGV--QLRELILIGARPSMGKTTFALSTALHMAMSGHG-----VAFFSLEMDRE--------KLGARALSNLL 194 (266)
Q Consensus 130 ~~LD~~~gG~--~~g~LiviaaRP~mGKTa~alnia~~~a~~g~~-----Vl~fSlEMs~~--------ql~~R~ls~~t 194 (266)
T Consensus 186 ~EI~r~i~IL~RR~KNNpiLvGepGVGKTAIvEGLA~rI~~g~VP~~L~~~~i~sLDl~~L~AGtkyRGeFEeRlk~il~ 265 (823)
T CHL00095 186 KEIERVIQILGRRTKNNPILIGEPGVGKTAIAEGLAQRIANRDVPDILEDKLVLTLDIGLLLAGTKYRGEFEERIKKIMD 265 (823)
T ss_pred HHHHHHHHHHHHHCCCCCEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCCEEEEEHHHHHHCCCCCHHHHHHHHHHHH
T ss_conf 99999999997732488502379998799999999997608899868759936884288775334222679999999999
Q ss_pred CC--------------------------CCCCCCHHHCCCCCC------CHHHHHHHHHHHHHHHH--CCCEEECCCCCC
Q ss_conf 22--------------------------323478555017889------98999999999999972--995474799889
Q gi|254781149|r 195 YP--------------------------SSSRIPYLNLIRGEI------NQEQYRISQGICEKLQD--FPLIIDDRPSPG 240 (266)
Q Consensus 195 ~~--------------------------~~s~I~~~~l~~g~l------~~~e~~~i~~a~~~l~~--~pl~IdD~~~~t 240 (266)
T Consensus 266 ei~~~~~iILFIDEiHtlvGaG~~~g~~DaaNlLKPaLarGel~~IGATT~~EYrk~iEkD~AL~RRFq~V~V~E---Ps 342 (823)
T CHL00095 266 EIKKANNIILVIDEIHTLIGAGAAEGAIDAANILKPALARGKLQCIGATTLEEYRKHIEKDPALERRFQPVYVGE---PS 342 (823)
T ss_pred HHHHCCCEEEEECCHHHHCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCHHHHHHCCCCCCCC---CC
T ss_conf 998579869997351653288976664317887657864898669970788999998530588996268410289---98
Q ss_pred HHHHHHHHHHHHHHHHHH
Q ss_conf 899999999999994799
Q gi|254781149|r 241 IMEFVHVANGLRNKHTKM 258 (266)
Q Consensus 241 i~~ira~aR~~k~k~~~~ 258 (266)
T Consensus 343 ~e~t~~IL~gl~~~yE~~ 360 (823)
T CHL00095 343 VEETIEILLGLRDRYEKH 360 (823)
T ss_pred HHHHHHHHHHHHHHHHHH
T ss_conf 799999999999999875