HHsearch alignment for GI: 254781149 and conserved domain: COG0468
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair].
Probab=98.32 E-value=2e-05 Score=58.05 Aligned_cols=133 Identities=22% Similarity=0.151 Sum_probs=85.7
Q ss_pred CCCCCCHHHHHHHHH-HHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCC
Q ss_conf 678511137777765-5301683688706874148899999999963022323641167534899999999630223234
Q gi|254781149|r 122 NPDIKWGLQSVDHLM-GGVQLRELILIGARPSMGKTTFALSTALHMAMSGHGVAFFSLEMDREKLGARALSNLLYPSSSR 200 (266)
Q Consensus 122 ~~Gi~TG~~~LD~~~-gG~~~g~LiviaaRP~mGKTa~alnia~~~a~~g~~Vl~fSlEMs~~ql~~R~ls~~t~~~~s~ 200 (266)
T Consensus 39 ~~~i~TGs~~LD~~LGGGl~~g~ItEiyG~~gsGKT~lal~~~~~aq~~g~~a~fIDtE~~l~p~r~~~l~~~~---~d~ 115 (279)
T COG0468 39 IEAISTGSLALDEALGGGLPRGRITEIYGPESSGKTTLALQLVANAQKPGGKAAFIDTEHALDPERAKQLGVDL---LDN 115 (279)
T ss_pred CCCCCCCCHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHH---HCC
T ss_conf 66016550557877468865535899846887654668999988865379808999589998999999988754---215
Q ss_pred CCHHHCCCCCCCHHHHHHHHHHHHHHHH--CCCEEECC-CCCCHHH------HHHHHHHHHHHHHHHHHH
Q ss_conf 7855501788998999999999999972--99547479-9889899------999999999994799986
Q gi|254781149|r 201 IPYLNLIRGEINQEQYRISQGICEKLQD--FPLIIDDR-PSPGIME------FVHVANGLRNKHTKMVQL 261 (266)
Q Consensus 201 I~~~~l~~g~l~~~e~~~i~~a~~~l~~--~pl~IdD~-~~~ti~~------ira~aR~~k~k~~~~~~~ 261 (266)
T Consensus 116 l~v----~~~~~~e~q~~i~~~~~~~~~~~i~LvVVDSvaa~~r~~~~~d~~~~~~~r~ls~~l~~L~~~ 181 (279)
T COG0468 116 LLV----SQPDTGEQQLEIAEKLARSGAEKIDLLVVDSVAALVRAEEIEDGHLGLRARLLSKALRKLTRL 181 (279)
T ss_pred EEE----ECCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 368----668977999999999987546887889982574346365548534899999999999999999