HHsearch alignment for GI: 254781149 and conserved domain: COG0468

>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair].
Probab=98.32  E-value=2e-05  Score=58.05  Aligned_cols=133  Identities=22%  Similarity=0.151  Sum_probs=85.7

Q ss_pred             CCCCCCHHHHHHHHH-HHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCC
Q ss_conf             678511137777765-5301683688706874148899999999963022323641167534899999999630223234
Q gi|254781149|r  122 NPDIKWGLQSVDHLM-GGVQLRELILIGARPSMGKTTFALSTALHMAMSGHGVAFFSLEMDREKLGARALSNLLYPSSSR  200 (266)
Q Consensus       122 ~~Gi~TG~~~LD~~~-gG~~~g~LiviaaRP~mGKTa~alnia~~~a~~g~~Vl~fSlEMs~~ql~~R~ls~~t~~~~s~  200 (266)
T Consensus        39 ~~~i~TGs~~LD~~LGGGl~~g~ItEiyG~~gsGKT~lal~~~~~aq~~g~~a~fIDtE~~l~p~r~~~l~~~~---~d~  115 (279)
T COG0468          39 IEAISTGSLALDEALGGGLPRGRITEIYGPESSGKTTLALQLVANAQKPGGKAAFIDTEHALDPERAKQLGVDL---LDN  115 (279)
T ss_pred             CCCCCCCCHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHH---HCC
T ss_conf             66016550557877468865535899846887654668999988865379808999589998999999988754---215


Q ss_pred             CCHHHCCCCCCCHHHHHHHHHHHHHHHH--CCCEEECC-CCCCHHH------HHHHHHHHHHHHHHHHHH
Q ss_conf             7855501788998999999999999972--99547479-9889899------999999999994799986
Q gi|254781149|r  201 IPYLNLIRGEINQEQYRISQGICEKLQD--FPLIIDDR-PSPGIME------FVHVANGLRNKHTKMVQL  261 (266)
Q Consensus       201 I~~~~l~~g~l~~~e~~~i~~a~~~l~~--~pl~IdD~-~~~ti~~------ira~aR~~k~k~~~~~~~  261 (266)
T Consensus       116 l~v----~~~~~~e~q~~i~~~~~~~~~~~i~LvVVDSvaa~~r~~~~~d~~~~~~~r~ls~~l~~L~~~  181 (279)
T COG0468         116 LLV----SQPDTGEQQLEIAEKLARSGAEKIDLLVVDSVAALVRAEEIEDGHLGLRARLLSKALRKLTRL  181 (279)
T ss_pred             EEE----ECCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf             368----668977999999999987546887889982574346365548534899999999999999999