HHsearch alignment for GI: 254781149 and conserved domain: COG0541
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion].
Probab=92.32 E-value=1 Score=25.22 Aligned_cols=104 Identities=20% Similarity=0.217 Sum_probs=65.3
Q ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHH--HHHHHHHCCCCCCCCHHHCCCCCCCHHHHHH
Q ss_conf 68368870687414889999999996302232364116753489999--9999630223234785550178899899999
Q gi|254781149|r 141 LRELILIGARPSMGKTTFALSTALHMAMSGHGVAFFSLEMDREKLGA--RALSNLLYPSSSRIPYLNLIRGEINQEQYRI 218 (266)
Q Consensus 141 ~g~LiviaaRP~mGKTa~alnia~~~a~~g~~Vl~fSlEMs~~ql~~--R~ls~~t~~~~s~I~~~~l~~g~l~~~e~~~ 218 (266)
T Consensus 99 ~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q-----~~v~~f~~~-~~~~P--v~I 170 (451)
T COG0541 99 PPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQ-----VGVPFFGSG-TEKDP--VEI 170 (451)
T ss_pred CCEEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHH-----CCCCEECCC-CCCCH--HHH
T ss_conf 9858999815679748689999999997499458985056786899999999986-----098531677-88997--999
Q ss_pred HHHHHHHHHHC--CCEEECCCCC-CHH-HHHHHHHHHH
Q ss_conf 99999999729--9547479988-989-9999999999
Q gi|254781149|r 219 SQGICEKLQDF--PLIIDDRPSP-GIM-EFVHVANGLR 252 (266)
Q Consensus 219 i~~a~~~l~~~--pl~IdD~~~~-ti~-~ira~aR~~k 252 (266)
T Consensus 171 ak~al~~ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik 208 (451)
T COG0541 171 AKAALEKAKEEGYDVVIVDTAGRLHIDEELMDELKEIK 208 (451)
T ss_pred HHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHH
T ss_conf 99999999974998899968873303099999999998