HHsearch alignment for GI: 254781149 and conserved domain: COG3598
>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair].
Probab=96.81 E-value=0.0044 Score=41.68 Aligned_cols=70 Identities=20% Similarity=0.225 Sum_probs=52.8
Q ss_pred HCCCCEEEEECCCCHHHHHHHHHHHHHHHH--C--C------CCEEEECCCCCHHHHHHHHHHHHHCCCCCCCCHHHCCC
Q ss_conf 016836887068741488999999999630--2--2------32364116753489999999963022323478555017
Q gi|254781149|r 139 VQLRELILIGARPSMGKTTFALSTALHMAM--S--G------HGVAFFSLEMDREKLGARALSNLLYPSSSRIPYLNLIR 208 (266)
Q Consensus 139 ~~~g~LiviaaRP~mGKTa~alnia~~~a~--~--g------~~Vl~fSlEMs~~ql~~R~ls~~t~~~~s~I~~~~l~~ 208 (266)
T Consensus 86 fr~g~~~~~~gdsg~GKttllL~l~IalaaG~~lfG~~v~epGkvlyvslEl~re~~L~Rl~~v~a~---mgLsPadvrn 162 (402)
T COG3598 86 FRKGYVSILYGDSGVGKTTLLLYLCIALAAGKNLFGNKVKEPGKVLYVSLELYREDILERLEPVRAR---MGLSPADVRN 162 (402)
T ss_pred HHCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHH---CCCCHHHHHH
T ss_conf 6517058984488623768999999999864777453355888079998226868899999999987---0998576322
Q ss_pred CCC
Q ss_conf 889
Q gi|254781149|r 209 GEI 211 (266)
Q Consensus 209 g~l 211 (266)
T Consensus 163 ~dl 165 (402)
T COG3598 163 MDL 165 (402)
T ss_pred EEC
T ss_conf 000