HHsearch alignment for GI: 254781149 and conserved domain: PRK05748
>PRK05748 replicative DNA helicase; Provisional.
Probab=100.00 E-value=0 Score=393.92 Aligned_cols=243 Identities=24% Similarity=0.345 Sum_probs=215.3
Q ss_pred HHHHHHHHC---CCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf 898986300---57785689999984067636899999999999999999999999999985114442345458999999
Q gi|254781149|r 4 EIISHFESQ---TKISFSTYLNNLLTLASSISSEVINAARRVVQQWARITISQEAKALALHTSDPTCNTATLIRKSMQSF 80 (266)
Q Consensus 4 ~~~~~le~~---~~i~~~~YL~~L~~~~~s~~~~~~~ya~~i~e~~~rR~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~l 80 (266)
T Consensus 69 tv~~~L~~~g~l~~iGg~~yL~~L~~~~~s-~~n~~~ya~iVke~~~~R~li~~~~~i~~~a~~~~~~~~~il~~ae~~l 147 (448)
T PRK05748 69 TVREILDDQGDLEEVGGLSYLVELANSVPT-AANIEYYAKIVREKATLRRLIRTATEIANSAYEPERDADEILDEAEKKI 147 (448)
T ss_pred HHHHHHHHCCCHHHCCCHHHHHHHHHCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
T ss_conf 999999766973431769999999963887-5569999999999999999999999999974278888899999999999
Q ss_pred HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHH-CCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHH
Q ss_conf 9999654431046655430116899999999999863-036667851113777776553016836887068741488999
Q gi|254781149|r 81 EDIISEVHLTKNQCTGSSCISIANAATTAMKSAEQQK-KEGENPDIKWGLQSVDHLMGGVQLRELILIGARPSMGKTTFA 159 (266)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~Gi~TG~~~LD~~~gG~~~g~LiviaaRP~mGKTa~a 159 (266)
T Consensus 148 ~~i~~~~-------~~~~~~~~~d~l~~~~~~ie~~~~~~~~~~Gi~TG~~~LD~~~~G~~~g~LiviaaRP~mGKTa~a 220 (448)
T PRK05748 148 FEVAEAR-------NKSGFKNIKDVLVKAYDRIEMLFNQTGDITGIPTGFRDLDKMTSGLQPNDLIIVAARPSVGKTAFA 220 (448)
T ss_pred HHHHHCC-------CCCCCEEHHHHHHHHHHHHHHHHHCCCCCCEEECCHHHHHHHHCCCCCCCEEEEEECCCCCHHHHH
T ss_conf 9998436-------877754499999999999999971899976105782789998279886737999847998768999
Q ss_pred HHHHHHHH-HCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHCCCEEECCCC
Q ss_conf 99999963-02232364116753489999999963022323478555017889989999999999999729954747998
Q gi|254781149|r 160 LSTALHMA-MSGHGVAFFSLEMDREKLGARALSNLLYPSSSRIPYLNLIRGEINQEQYRISQGICEKLQDFPLIIDDRPS 238 (266)
Q Consensus 160 lnia~~~a-~~g~~Vl~fSlEMs~~ql~~R~ls~~t~~~~s~I~~~~l~~g~l~~~e~~~i~~a~~~l~~~pl~IdD~~~ 238 (266)
T Consensus 221 lnia~~~a~~~~~~v~~fSlEM~~~~l~~R~la~~-----s~v~~~~i~~g~l~~~~~~~~~~a~~~l~~~~l~i~d~~~ 295 (448)
T PRK05748 221 LNIAQNVATKTDKNVAIFSLEMGAESLVMRMLCAE-----GRIDQQKLRTGQLTDEDWPKLTIAVGSLSDAPIYIDDTPG 295 (448)
T ss_pred HHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHH-----HCCCHHHHHCCCCCHHHHHHHHHHHHHHHCCCEEEECCCC
T ss_conf 99999999856980899817788889999999997-----4677777762899999999999999998659837855898
Q ss_pred CCHHHHHHHHHHHHHHHHHHH
Q ss_conf 898999999999999947999
Q gi|254781149|r 239 PGIMEFVHVANGLRNKHTKMV 259 (266)
Q Consensus 239 ~ti~~ira~aR~~k~k~~~~~ 259 (266)
T Consensus 296 ~ti~~i~~~~r~~~~~~~~~~ 316 (448)
T PRK05748 296 IKVTEIRARCRRLAQEHGGLG 316 (448)
T ss_pred CCHHHHHHHHHHHHHHCCCCC
T ss_conf 868999999999999759988