HHsearch alignment for GI: 254781149 and conserved domain: PRK06731
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated.
Probab=95.14 E-value=0.32 Score=28.72 Aligned_cols=87 Identities=14% Similarity=0.173 Sum_probs=55.1
Q ss_pred CEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCH----HHHHHHHHHHHHCCCCCCCCHHHCCCCCCCHHHHHH
Q ss_conf 3688706874148899999999963022323641167534----899999999630223234785550178899899999
Q gi|254781149|r 143 ELILIGARPSMGKTTFALSTALHMAMSGHGVAFFSLEMDR----EKLGARALSNLLYPSSSRIPYLNLIRGEINQEQYRI 218 (266)
Q Consensus 143 ~LiviaaRP~mGKTa~alnia~~~a~~g~~Vl~fSlEMs~----~ql~~R~ls~~t~~~~s~I~~~~l~~g~l~~~e~~~ 218 (266)
T Consensus 76 ~vI~lvG~~G~GKTTT~AKLA~~~~~~~~kV~lia~DtyR~aA~eQL--k~~a~~l-----~v~~~~~~----~~~~~~~ 144 (270)
T PRK06731 76 QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQL--QDYVKTI-----GFEVIAVR----DEAAMTR 144 (270)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHH--HHHHHHH-----CCCEECCC----CHHHHHH
T ss_conf 18999888989889999999999986799089998388888899999--9999981-----99535458----8789999
Q ss_pred HHHHHHHHHHCCCEEECCCCCC
Q ss_conf 9999999972995474799889
Q gi|254781149|r 219 SQGICEKLQDFPLIIDDRPSPG 240 (266)
Q Consensus 219 i~~a~~~l~~~pl~IdD~~~~t 240 (266)
T Consensus 145 ~~~~~~~~~~~DvilIDTAGR~ 166 (270)
T PRK06731 145 ALTYFKEEARVDYILIDTAGKN 166 (270)
T ss_pred HHHHHHHHCCCCEEEEECCCCC
T ss_conf 9999999769999999799987