HHsearch alignment for GI: 254781149 and conserved domain: PRK06793
>PRK06793 fliI flagellum-specific ATP synthase; Validated.
Probab=91.63 E-value=0.15 Score=30.93 Aligned_cols=97 Identities=15% Similarity=0.127 Sum_probs=57.2
Q ss_pred CCCCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHC---------------------------CCCEEEE
Q ss_conf 8511137777765530168368870687414889999999996302---------------------------2323641
Q gi|254781149|r 124 DIKWGLQSVDHLMGGVQLRELILIGARPSMGKTTFALSTALHMAMS---------------------------GHGVAFF 176 (266)
Q Consensus 124 Gi~TG~~~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a~~---------------------------g~~Vl~f 176 (266)
T Consensus 139 ~l~TGIraID~l~p-igrGQR~gIfg~sGvGKstLl~~i~~~~~adv~Vi~lIGeRgrEv~efi~~~l~~~gl~~tvvV~ 217 (432)
T PRK06793 139 VFETGIKSIDSMLT-IGIGQKIGIFAGSGVGKSTLLGMIAKNAKADINVISLVGERGREVKDFIRKELGEEGMRKSVVVV 217 (432)
T ss_pred CCCCCCCHHHHCCC-CCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEEEEEECHHHHHHHHHHHHCCCCCCEEEEE
T ss_conf 40048731000156-12462666632689878999999987245786579998886279999999986446752127887
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCCCCCHHHCC-CCC---CCHHHHHHHHHHHHHHH
Q ss_conf 1675348999999996302232347855501-788---99899999999999997
Q gi|254781149|r 177 SLEMDREKLGARALSNLLYPSSSRIPYLNLI-RGE---INQEQYRISQGICEKLQ 227 (266)
Q Consensus 177 SlEMs~~ql~~R~ls~~t~~~~s~I~~~~l~-~g~---l~~~e~~~i~~a~~~l~ 227 (266)
T Consensus 218 at--sd~p~~~r~~a~~~a~aiA----Eyfrd~G~~VLli~DslTr~A~A~REis 266 (432)
T PRK06793 218 AT--SDESHLMQLRAAKLATSIA----EYFRDQGNNVLLMMDSVTRFADARRSVD 266 (432)
T ss_pred EC--CCCCHHHHHHHHHHHHHHH----HHHHHCCCCEEEEECCHHHHHHHHHHHH
T ss_conf 25--8899899998875512378----8998669968999456788888874778