HHsearch alignment for GI: 254781149 and conserved domain: PRK06893
>PRK06893 DNA replication initiation factor; Validated.
Probab=94.63 E-value=0.3 Score=28.93 Aligned_cols=105 Identities=14% Similarity=0.233 Sum_probs=59.3
Q ss_pred CCEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCHHHHH-HHH
Q ss_conf 8368870687414889999999996302232364116753489999999963022323478555017889989999-999
Q gi|254781149|r 142 RELILIGARPSMGKTTFALSTALHMAMSGHGVAFFSLEMDREKLGARALSNLLYPSSSRIPYLNLIRGEINQEQYR-ISQ 220 (266)
Q Consensus 142 g~LiviaaRP~mGKTa~alnia~~~a~~g~~Vl~fSlEMs~~ql~~R~ls~~t~~~~s~I~~~~l~~g~l~~~e~~-~i~ 220 (266)
T Consensus 39 ~~~l~i~G~~gsGKTHLLqa~~~~~~~~~~~~~yi~~~~~~~-~~~~~l~~l~~~d~l~iDDi~~i~g---~~~~e~~lF 114 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKSQY-FSPAVLENLEQQDLVCLDDLQAVIG---NEEWELAIF 114 (229)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEEHHHHHH-CCHHHHHHHHHCCEEEEECHHHHCC---CHHHHHHHH
T ss_conf 987999899999889999999999997189859997377564-0699998765479799967234248---838999999
Q ss_pred HHHHHHHHC--C-CEEE-C-CCC---CCHHHHHHHHHH
Q ss_conf 999999729--9-5474-7-998---898999999999
Q gi|254781149|r 221 GICEKLQDF--P-LIID-D-RPS---PGIMEFVHVANG 250 (266)
Q Consensus 221 ~a~~~l~~~--p-l~Id-D-~~~---~ti~~ira~aR~ 250 (266)
T Consensus 115 ~l~N~l~~~~~~~ll~ss~~~p~~l~~~l~DL~SRl~~ 152 (229)
T PRK06893 115 DLFNRIKESGKTLLLISANQSPHALQIKLPDLASRLTW 152 (229)
T ss_pred HHHHHHHHCCCCEEEEECCCCHHHHCCHHHHHHHHHHC
T ss_conf 99999997599179985798833221002679999968