HHsearch alignment for GI: 254781149 and conserved domain: PRK06904
>PRK06904 replicative DNA helicase; Validated.
Probab=100.00 E-value=0 Score=390.19 Aligned_cols=247 Identities=20% Similarity=0.295 Sum_probs=208.1
Q ss_pred HHHHHHHHC---CCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCCHHHHHHHHHHH
Q ss_conf 898986300---57785689999984067636899999999999999999999999999985114-44234545899999
Q gi|254781149|r 4 EIISHFESQ---TKISFSTYLNNLLTLASSISSEVINAARRVVQQWARITISQEAKALALHTSDP-TCNTATLIRKSMQS 79 (266)
Q Consensus 4 ~~~~~le~~---~~i~~~~YL~~L~~~~~s~~~~~~~ya~~i~e~~~rR~l~~~~~~~~~~~~~~-~~~~~~~~~~~e~~ 79 (266)
T Consensus 82 Tv~~~L~~~g~l~~iGG~~YL~~L~~~~ps-~an~~~Ya~iVkeks~~R~li~~~~~i~~~a~~~~~~~~~~ild~ae~~ 160 (472)
T PRK06904 82 TLDQALKTKGKSDEVGGFAYLAELSNNTPS-AANILAYADIVREKAILRELISVGNNIAKNAYSPKGQDIKDILDEAERD 160 (472)
T ss_pred HHHHHHHHCCCHHHCCCHHHHHHHHHCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
T ss_conf 999999636980322859999999971997-8899999999999999999999988999986377788989999999999
Q ss_pred HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHH
Q ss_conf 99999654431046655430116899999999999863036667851113777776553016836887068741488999
Q gi|254781149|r 80 FEDIISEVHLTKNQCTGSSCISIANAATTAMKSAEQQKKEGENPDIKWGLQSVDHLMGGVQLRELILIGARPSMGKTTFA 159 (266)
Q Consensus 80 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~TG~~~LD~~~gG~~~g~LiviaaRP~mGKTa~a 159 (266)
T Consensus 161 l~~i~~~~~~~--~~~~~~~~~~~~~~~~~ie~~~~~~~~~~~~Gi~TG~~~LD~~t~Gl~~g~LiViAaRPsmGKTa~a 238 (472)
T PRK06904 161 VFSIAEKRTTA--NEGPQNVINLLENTIDKIENLAATPTNNGVTGVTTGFTDLDKKTAGLQPSDLIIVAARPSMGKTTFA 238 (472)
T ss_pred HHHHHHCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECCCHHHHHHHHCCCCCCCEEEEEECCCCCHHHHH
T ss_conf 99998525767--7650549999999999999999742899962322897999744158875757999737987568999
Q ss_pred HHHHHHHHHC-CCCEEEECCCCCHHHHHHHHHHHHHCCCCCCCCHHHCCCCC-CCHHHHHHHHHHHHHHHHCC-CEEECC
Q ss_conf 9999996302-23236411675348999999996302232347855501788-99899999999999997299-547479
Q gi|254781149|r 160 LSTALHMAMS-GHGVAFFSLEMDREKLGARALSNLLYPSSSRIPYLNLIRGE-INQEQYRISQGICEKLQDFP-LIIDDR 236 (266)
Q Consensus 160 lnia~~~a~~-g~~Vl~fSlEMs~~ql~~R~ls~~t~~~~s~I~~~~l~~g~-l~~~e~~~i~~a~~~l~~~p-l~IdD~ 236 (266)
T Consensus 239 lnia~n~A~~~~~~V~~fSLEM~~~~l~~R~ls~~-----s~v~~~~i~~g~~l~~~e~~~~~~~~~~l~~~~~l~idd~ 313 (472)
T PRK06904 239 MNLCENAAMASEKPVLVFSLEMPAEQIMMRMLASL-----SRVDQTKIRTGQNLDQQDWAKISSTVGMFKQKPNLYIDDS 313 (472)
T ss_pred HHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHH-----CCCCHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCEEEECC
T ss_conf 99999999955995799778799999999999986-----4999888646885609999999999999846898168469
Q ss_pred CCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 9889899999999999994799
Q gi|254781149|r 237 PSPGIMEFVHVANGLRNKHTKM 258 (266)
Q Consensus 237 ~~~ti~~ira~aR~~k~k~~~~ 258 (266)
T Consensus 314 ~~~t~~~i~~~~r~~~~~~~~l 335 (472)
T PRK06904 314 SGLTPTELRSRARRVYRENGGL 335 (472)
T ss_pred CCCCHHHHHHHHHHHHHHCCCC
T ss_conf 9999999999999999873899