HHsearch alignment for GI: 254781149 and conserved domain: PRK08084

>PRK08084 DNA replication initiation factor; Provisional.
Probab=95.04  E-value=0.2  Score=30.20  Aligned_cols=105  Identities=17%  Similarity=0.290  Sum_probs=57.4

Q ss_pred             CCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCHHHHH-HH
Q ss_conf             68368870687414889999999996302232364116753489999999963022323478555017889989999-99
Q gi|254781149|r  141 LRELILIGARPSMGKTTFALSTALHMAMSGHGVAFFSLEMDREKLGARALSNLLYPSSSRIPYLNLIRGEINQEQYR-IS  219 (266)
Q Consensus       141 ~g~LiviaaRP~mGKTa~alnia~~~a~~g~~Vl~fSlEMs~~ql~~R~ls~~t~~~~s~I~~~~l~~g~l~~~e~~-~i  219 (266)
T Consensus        44 ~~~~l~l~G~~G~GKTHLLqA~~~~~~~~~~~~~yl~~~~~~~-~~~~~l~~l~~~dll~iDDi~~i~g---~~~~ee~l  119 (235)
T PRK08084         44 HSGYIYLWGREGAGRSHLLHAACAELSQRGDAVGYVPLDKRAW-FVPEVLEGMEQLSLVCIDNIECIAG---DELWEMAI  119 (235)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEHHHHHH-HHHHHHHHHHHCCEEEEECHHHHCC---CHHHHHHH
T ss_conf             9876999899998889999999999970798579987798665-1799998764189899827455469---97899999


Q ss_pred             HHHHHHHHH---CCCEEE-CCC-C-C--CHHHHHHHHH
Q ss_conf             999999972---995474-799-8-8--9899999999
Q gi|254781149|r  220 QGICEKLQD---FPLIID-DRP-S-P--GIMEFVHVAN  249 (266)
Q Consensus       220 ~~a~~~l~~---~pl~Id-D~~-~-~--ti~~ira~aR  249 (266)
T Consensus       120 F~l~N~~~~~g~~~ll~ts~~~P~~l~~~l~DL~SRl~  157 (235)
T PRK08084        120 FDLYNRILESGKTRLLITGDRPPRQLNLGLPDLASRLD  157 (235)
T ss_pred             HHHHHHHHHHCCCEEEEECCCCHHHCCCCCHHHHHHHH
T ss_conf             99999999848966999679882430231288999995