HHsearch alignment for GI: 254781149 and conserved domain: PRK08840
>PRK08840 replicative DNA helicase; Provisional.
Probab=100.00 E-value=0 Score=389.98 Aligned_cols=244 Identities=23% Similarity=0.278 Sum_probs=206.7
Q ss_pred HHHHHHHH---CCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHH
Q ss_conf 89898630---0577856899999840676368999999999999999999999999999851144-4234545899999
Q gi|254781149|r 4 EIISHFES---QTKISFSTYLNNLLTLASSISSEVINAARRVVQQWARITISQEAKALALHTSDPT-CNTATLIRKSMQS 79 (266)
Q Consensus 4 ~~~~~le~---~~~i~~~~YL~~L~~~~~s~~~~~~~ya~~i~e~~~rR~l~~~~~~~~~~~~~~~-~~~~~~~~~~e~~ 79 (266)
T Consensus 79 Tv~~~L~~~~~L~~iGG~~yL~~L~~~~ps-~ani~~Ya~iVkeka~~R~li~~a~~i~~~~~d~~~~~~~~il~~ae~~ 157 (464)
T PRK08840 79 TLSEHLERREQLEDVGGFAYLADLAKNTPS-AANINAYADIVAERALVRNLIGVANEIADAGYDPQGRTSEDLLDMAESK 157 (464)
T ss_pred HHHHHHHHCCCHHHCCCHHHHHHHHHCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
T ss_conf 999999646982432729999999971997-8889999999999999999999999999972256688899999999999
Q ss_pred HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHH--CCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCHHHHH
Q ss_conf 99999654431046655430116899999999999863--0366678511137777765530168368870687414889
Q gi|254781149|r 80 FEDIISEVHLTKNQCTGSSCISIANAATTAMKSAEQQK--KEGENPDIKWGLQSVDHLMGGVQLRELILIGARPSMGKTT 157 (266)
Q Consensus 80 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~Gi~TG~~~LD~~~gG~~~g~LiviaaRP~mGKTa 157 (266)
T Consensus 158 l~~i~~~~-----~~~~~~~~~~~~~~~~~~e~ie~~~~~~~~~~~Gi~TG~~~LD~~~~Gl~~G~LiviaaRPsmGKTa 232 (464)
T PRK08840 158 VFAIAEER-----TSENEGPQNVDSILEKTLERIELLYKSPQDGVTGVSTGFTDLNKKTAGLQGSDLIIVAARPSMGKTT 232 (464)
T ss_pred HHHHHHCC-----CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHCCCCCCCCEEEEEECCCCCHHH
T ss_conf 99997335-----6677640019999999999999998577999736888989998753698757679998379873689
Q ss_pred HHHHHHHHHH-HCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEC
Q ss_conf 9999999963-0223236411675348999999996302232347855501788998999999999999972-9954747
Q gi|254781149|r 158 FALSTALHMA-MSGHGVAFFSLEMDREKLGARALSNLLYPSSSRIPYLNLIRGEINQEQYRISQGICEKLQD-FPLIIDD 235 (266)
Q Consensus 158 ~alnia~~~a-~~g~~Vl~fSlEMs~~ql~~R~ls~~t~~~~s~I~~~~l~~g~l~~~e~~~i~~a~~~l~~-~pl~IdD 235 (266)
T Consensus 233 lalnia~n~a~~~~~~v~~fSlEMs~~ql~~Rlls~~-----s~i~~~~ir~g~l~~~e~~~i~~a~~~~~~~~~l~idd 307 (464)
T PRK08840 233 FAMNLCENAAMDQDKPVLIFSLEMPAEQLMMRMLASL-----SRVDQTKIRTGQLDDEDWARISSTMGILMEKKNMYIDD 307 (464)
T ss_pred HHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHH-----CCCCCCHHHCCCCCHHHHHHHHHHHHHHHHCCCEEEEC
T ss_conf 9999999999965996799767799899999999985-----38982011148889999999999999998479958856
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 99889899999999999994799
Q gi|254781149|r 236 RPSPGIMEFVHVANGLRNKHTKM 258 (266)
Q Consensus 236 ~~~~ti~~ira~aR~~k~k~~~~ 258 (266)
T Consensus 308 ~~~~t~~~i~a~~r~~~~~~~~l 330 (464)
T PRK08840 308 SSGLTPTEVRSRARRVAREHGGL 330 (464)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 99875799999999999864898