HHsearch alignment for GI: 254781149 and conserved domain: PRK09183
>PRK09183 transposase/IS protein; Provisional.
Probab=97.23 E-value=0.00036 Score=49.26 Aligned_cols=50 Identities=20% Similarity=0.258 Sum_probs=41.6
Q ss_pred HCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHH
Q ss_conf 016836887068741488999999999630223236411675348999999996
Q gi|254781149|r 139 VQLRELILIGARPSMGKTTFALSTALHMAMSGHGVAFFSLEMDREKLGARALSN 192 (266)
Q Consensus 139 ~~~g~LiviaaRP~mGKTa~alnia~~~a~~g~~Vl~fSlEMs~~ql~~R~ls~ 192 (266)
T Consensus 98 i~~~~Nvil~G~~GtGKThLA~Alg~~A~~~G~~v~f~~----~~~L~~~L~~a 147 (258)
T PRK09183 98 IERNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTT----AADLLLQLSTA 147 (258)
T ss_pred HHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEE----HHHHHHHHHHH
T ss_conf 655886799899998689999999999998799399978----99999999999