HHsearch alignment for GI: 254781149 and conserved domain: PRK09354
>PRK09354 recA recombinase A; Provisional.
Probab=98.33 E-value=1.3e-05 Score=59.41 Aligned_cols=131 Identities=21% Similarity=0.194 Sum_probs=89.8
Q ss_pred CCCCCCCHHHHHHHHH--HHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHCCCC
Q ss_conf 6678511137777765--53016836887068741488999999999630223236411675348999999996302232
Q gi|254781149|r 121 ENPDIKWGLQSVDHLM--GGVQLRELILIGARPSMGKTTFALSTALHMAMSGHGVAFFSLEMDREKLGARALSNLLYPSS 198 (266)
Q Consensus 121 ~~~Gi~TG~~~LD~~~--gG~~~g~LiviaaRP~mGKTa~alnia~~~a~~g~~Vl~fSlEMs~~ql~~R~ls~~t~~~~ 198 (266)
T Consensus 37 ~v~~isTGsl~LD~aLGiGG~P~GRivEi~G~esSGKTtlal~~iaeaQk~Gg~~a~iDaE~ald~~~a~~l-------- 108 (350)
T PRK09354 37 DVETISTGSLALDIALGIGGLPKGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYAKKL-------- 108 (350)
T ss_pred CCCEECCCCHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHC--------
T ss_conf 766544771789998758996787089998898777999999999999975994799960002798899984--------
Q ss_pred CCCCHHHCCCCCCCHHHHHHHHHHHHHHHHCC---CEEECC-CCCC-H---------HHHHHHHHHHHHHHHHHHHHH
Q ss_conf 34785550178899899999999999997299---547479-9889-8---------999999999999947999864
Q gi|254781149|r 199 SRIPYLNLIRGEINQEQYRISQGICEKLQDFP---LIIDDR-PSPG-I---------MEFVHVANGLRNKHTKMVQLY 262 (266)
Q Consensus 199 s~I~~~~l~~g~l~~~e~~~i~~a~~~l~~~p---l~IdD~-~~~t-i---------~~ira~aR~~k~k~~~~~~~~ 262 (266)
T Consensus 109 -GVd~d~llv~q--pd~~Eqal~i~e~Lvrsg~vd~IVvDSVaAL~pk~Eieg~mgd~~vG~qARlmSqalRKlt~~i 183 (350)
T PRK09354 109 -GVDIDNLLVSQ--PDTGEQALEIADALVRSGAVDLIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGNI 183 (350)
T ss_pred -CCCHHHEEEEC--CCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf -97715717856--8679999999999985488418998253345768887313354226389999999999999998