HHsearch alignment for GI: 254781149 and conserved domain: PRK11300
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional.
Probab=94.55 E-value=0.22 Score=29.89 Aligned_cols=123 Identities=24% Similarity=0.236 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHH-------CCCCE-------------E-EE-----CCCCC
Q ss_conf 13777776553016836887068741488999999999630-------22323-------------6-41-----16753
Q gi|254781149|r 128 GLQSVDHLMGGVQLRELILIGARPSMGKTTFALSTALHMAM-------SGHGV-------------A-FF-----SLEMD 181 (266)
Q Consensus 128 G~~~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a~-------~g~~V-------------l-~f-----SlEMs 181 (266)
T Consensus 17 ~~~al~~vs~~v~~Gei~~liGpnGaGKSTL~~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~r~g~~~~~q~~~l~~~lt 96 (255)
T PRK11300 17 GLLAVNNVNLEVREQEVVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLDGQHIEGLPGHQIARMGVVRTFQHVRLFKEMT 96 (255)
T ss_pred CEEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECCEECCCCCHHHHHHCCCEEECCCCCCCCCCC
T ss_conf 99988040889899979999989996499999999679889860899999988879999998668255322300277864
Q ss_pred HHHH------------------------------HHHHHHHHHCCCCCCCCHHHC---CCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 4899------------------------------999999630223234785550---1788998999999999999972
Q gi|254781149|r 182 REKL------------------------------GARALSNLLYPSSSRIPYLNL---IRGEINQEQYRISQGICEKLQD 228 (266)
Q Consensus 182 ~~ql------------------------------~~R~ls~~t~~~~s~I~~~~l---~~g~l~~~e~~~i~~a~~~l~~ 228 (266)
T Consensus 97 v~enl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l-----~~~~l~~~~~~~~~~LSgGq~Qrv~iAraL~~~ 171 (255)
T PRK11300 97 VIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWL-----ERVGLLEHANRQAGNLAYGQQRRLEIARCMVTQ 171 (255)
T ss_pred HHHHHHHHHHHHCCCCHHHHHHCCCCHHHHHHHHHHHHHHHH-----HHCCCCHHHCCCHHHCCCHHHHHHHHHHHHHHC
T ss_conf 877765554420220034332125201066899999999999-----976992131588466794889999999999729
Q ss_pred CCCEEECCCCCCH-----HHHHHHHHHHHHHH
Q ss_conf 9954747998898-----99999999999994
Q gi|254781149|r 229 FPLIIDDRPSPGI-----MEFVHVANGLRNKH 255 (266)
Q Consensus 229 ~pl~IdD~~~~ti-----~~ira~aR~~k~k~ 255 (266)
T Consensus 172 P~lLlLDEPt~gLD~~~~~~i~~~i~~l~~~~ 203 (255)
T PRK11300 172 PRILMLDEPAAGLNPKETKELDELIAELRNEH 203 (255)
T ss_pred CCEEEECCCCCCCCHHHHHHHHHHHHHHHHCC
T ss_conf 99699818754699999999999999999715