HHsearch alignment for GI: 254781149 and conserved domain: PRK11823

>PRK11823 DNA repair protein RadA; Provisional.
Probab=99.42  E-value=1.9e-12  Score=107.05  Aligned_cols=126  Identities=25%  Similarity=0.362  Sum_probs=96.1

Q ss_pred             CCCCCCHHHHHHHHH-HHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCC
Q ss_conf             678511137777765-5301683688706874148899999999963022323641167534899999999630223234
Q gi|254781149|r  122 NPDIKWGLQSVDHLM-GGVQLRELILIGARPSMGKTTFALSTALHMAMSGHGVAFFSLEMDREKLGARALSNLLYPSSSR  200 (266)
Q Consensus       122 ~~Gi~TG~~~LD~~~-gG~~~g~LiviaaRP~mGKTa~alnia~~~a~~g~~Vl~fSlEMs~~ql~~R~ls~~t~~~~s~  200 (266)
T Consensus        69 ~~R~~Tgi~ElDRVLGGGlV~GS~iLlgGePGIGKSTLlLQ~a~~la-~~~~vLYvSGEES~~Qik~RA~--RL-----g  140 (454)
T PRK11823         69 EPRISTGIGELDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAAALA-AGGKVLYVSGEESLQQIKLRAE--RL-----G  140 (454)
T ss_pred             CCCCCCCCHHHHHCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHH-CCCCEEEECCCHHHHHHHHHHH--HH-----C
T ss_conf             55323785566522158720664899507998889999999999985-5995799815015789999999--75-----8


Q ss_pred             CCHHHCCCCCCCHHHHHHHHHHHHHHHHCCCEEE--------C--CCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             7855501788998999999999999972995474--------7--9988989999999999999479
Q gi|254781149|r  201 IPYLNLIRGEINQEQYRISQGICEKLQDFPLIID--------D--RPSPGIMEFVHVANGLRNKHTK  257 (266)
Q Consensus       201 I~~~~l~~g~l~~~e~~~i~~a~~~l~~~pl~Id--------D--~~~~ti~~ira~aR~~k~k~~~  257 (266)
T Consensus       141 ~~~~~l~--l~~et~l~~Il~~i~~~~P~~lIIDSIQT~~~~~~~s~pGsvsQVre~a~~L~~~AK~  205 (454)
T PRK11823        141 LPSDNLY--LLAETNLEDILATIEEEKPDLVVIDSIQTMYSPELESAPGSVSQVRECAAELTRLAKQ  205 (454)
T ss_pred             CCCCCCE--EEECCCHHHHHHHHHHHCCCEEEEECHHEEEECCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf             8888737--8853689999999986099889994311154156677899789999999999999974