HHsearch alignment for GI: 254781149 and conserved domain: PRK11823
>PRK11823 DNA repair protein RadA; Provisional.
Probab=99.42 E-value=1.9e-12 Score=107.05 Aligned_cols=126 Identities=25% Similarity=0.362 Sum_probs=96.1
Q ss_pred CCCCCCHHHHHHHHH-HHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCC
Q ss_conf 678511137777765-5301683688706874148899999999963022323641167534899999999630223234
Q gi|254781149|r 122 NPDIKWGLQSVDHLM-GGVQLRELILIGARPSMGKTTFALSTALHMAMSGHGVAFFSLEMDREKLGARALSNLLYPSSSR 200 (266)
Q Consensus 122 ~~Gi~TG~~~LD~~~-gG~~~g~LiviaaRP~mGKTa~alnia~~~a~~g~~Vl~fSlEMs~~ql~~R~ls~~t~~~~s~ 200 (266)
T Consensus 69 ~~R~~Tgi~ElDRVLGGGlV~GS~iLlgGePGIGKSTLlLQ~a~~la-~~~~vLYvSGEES~~Qik~RA~--RL-----g 140 (454)
T PRK11823 69 EPRISTGIGELDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAAALA-AGGKVLYVSGEESLQQIKLRAE--RL-----G 140 (454)
T ss_pred CCCCCCCCHHHHHCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHH-CCCCEEEECCCHHHHHHHHHHH--HH-----C
T ss_conf 55323785566522158720664899507998889999999999985-5995799815015789999999--75-----8
Q ss_pred CCHHHCCCCCCCHHHHHHHHHHHHHHHHCCCEEE--------C--CCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 7855501788998999999999999972995474--------7--9988989999999999999479
Q gi|254781149|r 201 IPYLNLIRGEINQEQYRISQGICEKLQDFPLIID--------D--RPSPGIMEFVHVANGLRNKHTK 257 (266)
Q Consensus 201 I~~~~l~~g~l~~~e~~~i~~a~~~l~~~pl~Id--------D--~~~~ti~~ira~aR~~k~k~~~ 257 (266)
T Consensus 141 ~~~~~l~--l~~et~l~~Il~~i~~~~P~~lIIDSIQT~~~~~~~s~pGsvsQVre~a~~L~~~AK~ 205 (454)
T PRK11823 141 LPSDNLY--LLAETNLEDILATIEEEKPDLVVIDSIQTMYSPELESAPGSVSQVRECAAELTRLAKQ 205 (454)
T ss_pred CCCCCCE--EEECCCHHHHHHHHHHHCCCEEEEECHHEEEECCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 8888737--8853689999999986099889994311154156677899789999999999999974