HHsearch alignment for GI: 254781149 and conserved domain: PRK11889

Probab=95.35  E-value=0.18  Score=30.50  Aligned_cols=92  Identities=12%  Similarity=0.074  Sum_probs=58.1

Q ss_pred             CCEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHH--HHHHHHHCCCCCCCCHHHCCCCCCCHHHHHHH
Q ss_conf             8368870687414889999999996302232364116753489999--99996302232347855501788998999999
Q gi|254781149|r  142 RELILIGARPSMGKTTFALSTALHMAMSGHGVAFFSLEMDREKLGA--RALSNLLYPSSSRIPYLNLIRGEINQEQYRIS  219 (266)
Q Consensus       142 g~LiviaaRP~mGKTa~alnia~~~a~~g~~Vl~fSlEMs~~ql~~--R~ls~~t~~~~s~I~~~~l~~g~l~~~e~~~i  219 (266)
T Consensus       241 ~q~IALVGPTGVGKTTTIAKLAArf~~~~KkVALITtDTYRIGAVEQLKTYAeI-----MgVPV~VV----~dp~eL~~A  311 (436)
T PRK11889        241 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKT-----IGFEVIAV----RDEAAMTRA  311 (436)
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHH-----HCCCEEEE----CCHHHHHHH
T ss_conf             717999899998889999999999861698089998066347699999999998-----49943996----888999999


Q ss_pred             HHHHHHHHHCCCEEECCCCCCHH
Q ss_conf             99999997299547479988989
Q gi|254781149|r  220 QGICEKLQDFPLIIDDRPSPGIM  242 (266)
Q Consensus       220 ~~a~~~l~~~pl~IdD~~~~ti~  242 (266)
T Consensus       312 L~~lkdka~~DLILIDTAGRS~R  334 (436)
T PRK11889        312 LTYFKEEARVDYILIDTAGKNYR  334 (436)
T ss_pred             HHHHHHCCCCCEEEEECCCCCCC
T ss_conf             99876336888899929898846