HHsearch alignment for GI: 254781149 and conserved domain: PRK12723

>PRK12723 flagellar biosynthesis regulator FlhF; Provisional.
Probab=91.68  E-value=1.2  Score=24.73  Aligned_cols=88  Identities=14%  Similarity=0.260  Sum_probs=58.1

Q ss_pred             CCEEEEECCCCHHHHHHHHHHHHHHHHC----CCCEEEECCCCCH----HHHHHHHHHHHHCCCCCCCCHHHCCCCCCCH
Q ss_conf             8368870687414889999999996302----2323641167534----8999999996302232347855501788998
Q gi|254781149|r  142 RELILIGARPSMGKTTFALSTALHMAMS----GHGVAFFSLEMDR----EKLGARALSNLLYPSSSRIPYLNLIRGEINQ  213 (266)
Q Consensus       142 g~LiviaaRP~mGKTa~alnia~~~a~~----g~~Vl~fSlEMs~----~ql~~R~ls~~t~~~~s~I~~~~l~~g~l~~  213 (266)
T Consensus       174 ~~vi~lVGPTGvGKTTTiAKLAa~~~l~~~~k~~~V~lit~DtyRigAveQL--ktya~i-----l~vp~~v~~----~~  242 (388)
T PRK12723        174 KRIFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQI--QTYGDI-----MGIPVKAIE----SF  242 (388)
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHH--HHHHHH-----HCCCEEEEC----CH
T ss_conf             6289998998875787999999999986267677379998078758899999--999999-----788069857----88


Q ss_pred             HHHHHHHHHHHHHHHCCCEEECCCCCCHHH
Q ss_conf             999999999999972995474799889899
Q gi|254781149|r  214 EQYRISQGICEKLQDFPLIIDDRPSPGIME  243 (266)
Q Consensus       214 ~e~~~i~~a~~~l~~~pl~IdD~~~~ti~~  243 (266)
T Consensus       243 ~dl---~~~l~~~~~~D~IlIDTAGrs~~d  269 (388)
T PRK12723        243 KDL---KEEITQSKDFDLVLIDTIGKSPKD  269 (388)
T ss_pred             HHH---HHHHHHHCCCCEEEEECCCCCCCC
T ss_conf             999---999997249999999589988568