HHsearch alignment for GI: 254781149 and conserved domain: PRK12723
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional.
Probab=91.68 E-value=1.2 Score=24.73 Aligned_cols=88 Identities=14% Similarity=0.260 Sum_probs=58.1
Q ss_pred CCEEEEECCCCHHHHHHHHHHHHHHHHC----CCCEEEECCCCCH----HHHHHHHHHHHHCCCCCCCCHHHCCCCCCCH
Q ss_conf 8368870687414889999999996302----2323641167534----8999999996302232347855501788998
Q gi|254781149|r 142 RELILIGARPSMGKTTFALSTALHMAMS----GHGVAFFSLEMDR----EKLGARALSNLLYPSSSRIPYLNLIRGEINQ 213 (266)
Q Consensus 142 g~LiviaaRP~mGKTa~alnia~~~a~~----g~~Vl~fSlEMs~----~ql~~R~ls~~t~~~~s~I~~~~l~~g~l~~ 213 (266)
T Consensus 174 ~~vi~lVGPTGvGKTTTiAKLAa~~~l~~~~k~~~V~lit~DtyRigAveQL--ktya~i-----l~vp~~v~~----~~ 242 (388)
T PRK12723 174 KRIFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQI--QTYGDI-----MGIPVKAIE----SF 242 (388)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHH--HHHHHH-----HCCCEEEEC----CH
T ss_conf 6289998998875787999999999986267677379998078758899999--999999-----788069857----88
Q ss_pred HHHHHHHHHHHHHHHCCCEEECCCCCCHHH
Q ss_conf 999999999999972995474799889899
Q gi|254781149|r 214 EQYRISQGICEKLQDFPLIIDDRPSPGIME 243 (266)
Q Consensus 214 ~e~~~i~~a~~~l~~~pl~IdD~~~~ti~~ 243 (266)
T Consensus 243 ~dl---~~~l~~~~~~D~IlIDTAGrs~~d 269 (388)
T PRK12723 243 KDL---KEEITQSKDFDLVLIDTIGKSPKD 269 (388)
T ss_pred HHH---HHHHHHHCCCCEEEEECCCCCCCC
T ss_conf 999---999997249999999589988568