HHsearch alignment for GI: 254781149 and conserved domain: PRK13539
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional.
Probab=93.66 E-value=0.66 Score=26.53 Aligned_cols=113 Identities=14% Similarity=0.064 Sum_probs=67.7
Q ss_pred HHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHH-HC------CCC--------EEE------ECCCCCHHHHHHH
Q ss_conf 77777655301683688706874148899999999963-02------232--------364------1167534899999
Q gi|254781149|r 130 QSVDHLMGGVQLRELILIGARPSMGKTTFALSTALHMA-MS------GHG--------VAF------FSLEMDREKLGAR 188 (266)
Q Consensus 130 ~~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a-~~------g~~--------Vl~------fSlEMs~~ql~~R 188 (266)
T Consensus 16 ~il~~vsf~i~~Gei~~l~G~NGaGKTTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~~~~~~ltv~e~l~~ 95 (206)
T PRK13539 16 VVFSGLSFTLAAGEALVLTGPNGSGKTTLLRLLAGLLPPAAGTIKLDGGIQDSPVAEACHYLGHRNAMKPALTVAENLEF 95 (206)
T ss_pred EEECCCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECCEECCCCHHHHCEECCCCCCCCCCCCHHHHHHH
T ss_conf 99815078986994999989999989999999958878885189999977666638770451641336778799999999
Q ss_pred HHHHHHCCCC-------CCCCHH---HCCCCCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCHHH
Q ss_conf 9996302232-------347855---501788998999999999999972995474799889899
Q gi|254781149|r 189 ALSNLLYPSS-------SRIPYL---NLIRGEINQEQYRISQGICEKLQDFPLIIDDRPSPGIME 243 (266)
Q Consensus 189 ~ls~~t~~~~-------s~I~~~---~l~~g~l~~~e~~~i~~a~~~l~~~pl~IdD~~~~ti~~ 243 (266)
T Consensus 96 ~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~la~al~~~p~vllLDEPtsgLD~ 159 (206)
T PRK13539 96 W-AAFLGGEELDIAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRPIWLLDEPTAALDS 159 (206)
T ss_pred H-HHHCCCCHHHHHHHHHHCCCHHHHCCCHHHCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCH
T ss_conf 9-987599789999999984994464788124999999999999999869898999799777899