HHsearch alignment for GI: 254781149 and conserved domain: PRK13540

>PRK13540 cytochrome c biogenesis protein CcmA; Provisional.
Probab=92.97  E-value=0.84  Score=25.79  Aligned_cols=108  Identities=13%  Similarity=0.061  Sum_probs=66.1

Q ss_pred             HHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHH-C------C-----------CCEEEEC------CCCCHHHH
Q ss_conf             777776553016836887068741488999999999630-2------2-----------3236411------67534899
Q gi|254781149|r  130 QSVDHLMGGVQLRELILIGARPSMGKTTFALSTALHMAM-S------G-----------HGVAFFS------LEMDREKL  185 (266)
Q Consensus       130 ~~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a~-~------g-----------~~Vl~fS------lEMs~~ql  185 (266)
T Consensus        15 ~vl~~is~~i~~G~i~~l~G~NGaGKSTLlkli~Gl~~p~~G~I~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~ltv~e~   94 (200)
T PRK13540         15 PLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTYQKQLCFVGHRSGINPYLTLREN   94 (200)
T ss_pred             EEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCHHHHHHHEEEECCCCCCCCCCCHHHH
T ss_conf             98812278987997999988999879999999977858898569999986463447776337874443467867769999


Q ss_pred             H-------------HHHHHHHHCCCCCCCCH-HHCCCCCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCHHH
Q ss_conf             9-------------99999630223234785-5501788998999999999999972995474799889899
Q gi|254781149|r  186 G-------------ARALSNLLYPSSSRIPY-LNLIRGEINQEQYRISQGICEKLQDFPLIIDDRPSPGIME  243 (266)
Q Consensus       186 ~-------------~R~ls~~t~~~~s~I~~-~~l~~g~l~~~e~~~i~~a~~~l~~~pl~IdD~~~~ti~~  243 (266)
T Consensus        95 ~~~~~~~~~~~~~~~~l~~~-~-----~l~~~~~~~~~~LSgGqkqrv~lar~l~~~p~illLDEPt~gLD~  160 (200)
T PRK13540         95 CLYDIHFSPGAVGITELCRL-F-----SLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDE  160 (200)
T ss_pred             HHHHHHCCCHHHHHHHHHHH-C-----CCHHHHCCCHHHCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCH
T ss_conf             87554338316679999997-2-----975564497124999999999999999839998999177643899