HHsearch alignment for GI: 254781149 and conserved domain: PRK13540
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional.
Probab=92.97 E-value=0.84 Score=25.79 Aligned_cols=108 Identities=13% Similarity=0.061 Sum_probs=66.1
Q ss_pred HHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHH-C------C-----------CCEEEEC------CCCCHHHH
Q ss_conf 777776553016836887068741488999999999630-2------2-----------3236411------67534899
Q gi|254781149|r 130 QSVDHLMGGVQLRELILIGARPSMGKTTFALSTALHMAM-S------G-----------HGVAFFS------LEMDREKL 185 (266)
Q Consensus 130 ~~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a~-~------g-----------~~Vl~fS------lEMs~~ql 185 (266)
T Consensus 15 ~vl~~is~~i~~G~i~~l~G~NGaGKSTLlkli~Gl~~p~~G~I~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~ltv~e~ 94 (200)
T PRK13540 15 PLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTYQKQLCFVGHRSGINPYLTLREN 94 (200)
T ss_pred EEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCHHHHHHHEEEECCCCCCCCCCCHHHH
T ss_conf 98812278987997999988999879999999977858898569999986463447776337874443467867769999
Q ss_pred H-------------HHHHHHHHCCCCCCCCH-HHCCCCCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCHHH
Q ss_conf 9-------------99999630223234785-5501788998999999999999972995474799889899
Q gi|254781149|r 186 G-------------ARALSNLLYPSSSRIPY-LNLIRGEINQEQYRISQGICEKLQDFPLIIDDRPSPGIME 243 (266)
Q Consensus 186 ~-------------~R~ls~~t~~~~s~I~~-~~l~~g~l~~~e~~~i~~a~~~l~~~pl~IdD~~~~ti~~ 243 (266)
T Consensus 95 ~~~~~~~~~~~~~~~~l~~~-~-----~l~~~~~~~~~~LSgGqkqrv~lar~l~~~p~illLDEPt~gLD~ 160 (200)
T PRK13540 95 CLYDIHFSPGAVGITELCRL-F-----SLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDE 160 (200)
T ss_pred HHHHHHCCCHHHHHHHHHHH-C-----CCHHHHCCCHHHCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCH
T ss_conf 87554338316679999997-2-----975564497124999999999999999839998999177643899