HHsearch alignment for GI: 254781149 and conserved domain: PRK13869
>PRK13869 plasmid-partitioning protein RepA; Provisional.
Probab=94.25 E-value=0.045 Score=34.65 Aligned_cols=38 Identities=26% Similarity=0.283 Sum_probs=31.2
Q ss_pred CEEEEE-CCCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Q ss_conf 368870-68741488999999999630223236411675
Q gi|254781149|r 143 ELILIG-ARPSMGKTTFALSTALHMAMSGHGVAFFSLEM 180 (266)
Q Consensus 143 ~Livia-aRP~mGKTa~alnia~~~a~~g~~Vl~fSlEM 180 (266)
T Consensus 122 kVIaVaN~KGGVGKTTtav~LA~~LA~~G~RVLlIDLDP 160 (405)
T PRK13869 122 QVIAVTNFKGGSGKTTTSAHLAQYLALQGYRVLAVDLDP 160 (405)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCH
T ss_conf 289997888776599999999999997799889996456