HHsearch alignment for GI: 254781149 and conserved domain: TIGR01587

>TIGR01587 cas3_core CRISPR-associated helicase Cas3; InterPro: IPR006474 This entry represents a highly conserved core region of the Cas3 sequences. The proteins are found in association with CRISPR repeat elements in a broad range of bacteria and Archaea . Cas3 appears to be a helicase, containing a DEAD/DEAH box region and conserved C-terminal domain. Some but not all members have an N-terminal HD domain region (IPR006674 from INTERPRO), these sequences are not included within this group..
Probab=90.43  E-value=0.44  Score=27.77  Aligned_cols=51  Identities=22%  Similarity=0.156  Sum_probs=40.5

Q ss_pred             EEEEECCCCHHHHHHHHHHHHH---HHHC---CCCEEEECCCCCHHHHHHHHHH----HHH
Q ss_conf             6887068741488999999999---6302---2323641167534899999999----630
Q gi|254781149|r  144 LILIGARPSMGKTTFALSTALH---MAMS---GHGVAFFSLEMDREKLGARALS----NLL  194 (266)
Q Consensus       144 LiviaaRP~mGKTa~alnia~~---~a~~---g~~Vl~fSlEMs~~ql~~R~ls----~~t  194 (266)
T Consensus         1 ~~v~~APTG~GKTe~aL~~A~~sah~~k~~~~~~~I~alP~r~~~na~~~r~~~sash~Fg   61 (424)
T TIGR01587         1 LLVIEAPTGYGKTEAALLWALKSAHLIKKQKADKVIFALPTRVTINAMYRRLKESASHLFG   61 (424)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCEEEECCHHHHHHHHHHHHHHHHHHHCC
T ss_conf             9688617899878999999986366642244401012202688899999999986775417