HHsearch alignment for GI: 254781149 and conserved domain: TIGR02237
>TIGR02237 recomb_radB DNA repair and recombination protein RadB; InterPro: IPR011939 This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA, eukaryotic RAD51 (IPR011941 from INTERPRO) and DMC1 (IPR011940 from INTERPRO), and archaeal RadA (IPR011938 from INTERPRO) ,, .; GO: 0003684 damaged DNA binding, 0005524 ATP binding, 0008094 DNA-dependent ATPase activity, 0006281 DNA repair, 0006310 DNA recombination.
Probab=97.71 E-value=3.7e-05 Score=56.20 Aligned_cols=98 Identities=22% Similarity=0.241 Sum_probs=66.8
Q ss_pred HHHHH-HHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEECCCC-CHHHHHHHHHHHHHCCCCCCCCHHHCC--
Q ss_conf 77765-53016836887068741488999999999630223236411675-348999999996302232347855501--
Q gi|254781149|r 132 VDHLM-GGVQLRELILIGARPSMGKTTFALSTALHMAMSGHGVAFFSLEM-DREKLGARALSNLLYPSSSRIPYLNLI-- 207 (266)
Q Consensus 132 LD~~~-gG~~~g~LiviaaRP~mGKTa~alnia~~~a~~g~~Vl~fSlEM-s~~ql~~R~ls~~t~~~~s~I~~~~l~-- 207 (266)
T Consensus 1 iD~LLgGGvE~G~iTQiYGp~G~GKTn~c~~~a~~a~~~Gk~v~YiDTEGGLS~E---R~~q~~~~---~~~D~e~~~~~ 74 (223)
T TIGR02237 1 IDELLGGGVERGIITQIYGPPGSGKTNICLILAVNAARQGKKVVYIDTEGGLSPE---RFKQIAED---RALDPERVLSN 74 (223)
T ss_pred CCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHH---HHHHHHHC---CCCCHHHHHCC
T ss_conf 9522058512035889875899867899999999998618958999628983289---99998630---58898888415
Q ss_pred ----C-CCCCHHHHHHHHHHHHHHHH----CCCEEECC
Q ss_conf ----7-88998999999999999972----99547479
Q gi|254781149|r 208 ----R-GEINQEQYRISQGICEKLQD----FPLIIDDR 236 (266)
Q Consensus 208 ----~-g~l~~~e~~~i~~a~~~l~~----~pl~IdD~ 236 (266)
T Consensus 75 ~iv~~~~~f~-eQ~~ai~~~~~~~~~~G~~~~LvVvDs 111 (223)
T TIGR02237 75 VIVFEVFDFD-EQEVAIQKTSKLIDRDGDKADLVVVDS 111 (223)
T ss_pred EEEECCCCHH-HHHHHHHHHHHHHHCCCCEEEEEEEEC
T ss_conf 3552353567-899999999999860688331488815