HHsearch alignment for GI: 254781149 and conserved domain: TIGR02546
>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase; InterPro: IPR013380 Proteins in this entry are found in a variety of bacteria, and are predicted to be ATPases involved in type III secretion systems. One example is YscN (P40290 from SWISSPROT) from Yersinia enterocolitica, which is thought to energise the YOP (Yersinia outer protein) secretion system .; GO: 0046961 hydrogen ion transporting ATPase activity rotational mechanism, 0030254 protein secretion by the type III secretion system.
Probab=94.66 E-value=0.034 Score=35.55 Aligned_cols=96 Identities=15% Similarity=0.067 Sum_probs=63.8
Q ss_pred CCCCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHH---------------------------CCCCEEEE
Q ss_conf 851113777776553016836887068741488999999999630---------------------------22323641
Q gi|254781149|r 124 DIKWGLQSVDHLMGGVQLRELILIGARPSMGKTTFALSTALHMAM---------------------------SGHGVAFF 176 (266)
Q Consensus 124 Gi~TG~~~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a~---------------------------~g~~Vl~f 176 (266)
T Consensus 136 PL~tGvRaiDGlLT-cG~GQRiGIFA~aG~GKSTLL~~i~~g~~ADv~V~ALIGERGREVREFiE~~lg~e~~~RsVlVv 214 (430)
T TIGR02546 136 PLPTGVRAIDGLLT-CGEGQRIGIFAGAGVGKSTLLGMIARGASADVNVIALIGERGREVREFIEHLLGEEGRKRSVLVV 214 (430)
T ss_pred CCHHHHHHHHHHHH-CCCCCEEEEEECCCCCHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHCCCHHHCCCEEEEE
T ss_conf 51014667543440-36653057870888616689999861898878998602787604788875207830524248996
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCCCCCHHHCCC-CC---CCHHHHHHHHHHHHHH
Q ss_conf 16753489999999963022323478555017-88---9989999999999999
Q gi|254781149|r 177 SLEMDREKLGARALSNLLYPSSSRIPYLNLIR-GE---INQEQYRISQGICEKL 226 (266)
Q Consensus 177 SlEMs~~ql~~R~ls~~t~~~~s~I~~~~l~~-g~---l~~~e~~~i~~a~~~l 226 (266)
T Consensus 215 sT--SDrss~eR~~AAy~ATaI----AEYFRDQGk~VlLmmDSlTRfARA~REi 262 (430)
T TIGR02546 215 ST--SDRSSLERLKAAYTATAI----AEYFRDQGKRVLLMMDSLTRFARALREI 262 (430)
T ss_pred EC--CCCCHHHHHHHHHHHHHH----HHHHHHCCCEEEEEEECHHHHHHHHHHH
T ss_conf 07--986679999998788799----9999973990798840277999998778