HHsearch alignment for GI: 254781149 and conserved domain: TIGR02546

>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase; InterPro: IPR013380 Proteins in this entry are found in a variety of bacteria, and are predicted to be ATPases involved in type III secretion systems. One example is YscN (P40290 from SWISSPROT) from Yersinia enterocolitica, which is thought to energise the YOP (Yersinia outer protein) secretion system .; GO: 0046961 hydrogen ion transporting ATPase activity rotational mechanism, 0030254 protein secretion by the type III secretion system.
Probab=94.66  E-value=0.034  Score=35.55  Aligned_cols=96  Identities=15%  Similarity=0.067  Sum_probs=63.8

Q ss_pred             CCCCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHH---------------------------CCCCEEEE
Q ss_conf             851113777776553016836887068741488999999999630---------------------------22323641
Q gi|254781149|r  124 DIKWGLQSVDHLMGGVQLRELILIGARPSMGKTTFALSTALHMAM---------------------------SGHGVAFF  176 (266)
Q Consensus       124 Gi~TG~~~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a~---------------------------~g~~Vl~f  176 (266)
T Consensus       136 PL~tGvRaiDGlLT-cG~GQRiGIFA~aG~GKSTLL~~i~~g~~ADv~V~ALIGERGREVREFiE~~lg~e~~~RsVlVv  214 (430)
T TIGR02546       136 PLPTGVRAIDGLLT-CGEGQRIGIFAGAGVGKSTLLGMIARGASADVNVIALIGERGREVREFIEHLLGEEGRKRSVLVV  214 (430)
T ss_pred             CCHHHHHHHHHHHH-CCCCCEEEEEECCCCCHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHCCCHHHCCCEEEEE
T ss_conf             51014667543440-36653057870888616689999861898878998602787604788875207830524248996


Q ss_pred             CCCCCHHHHHHHHHHHHHCCCCCCCCHHHCCC-CC---CCHHHHHHHHHHHHHH
Q ss_conf             16753489999999963022323478555017-88---9989999999999999
Q gi|254781149|r  177 SLEMDREKLGARALSNLLYPSSSRIPYLNLIR-GE---INQEQYRISQGICEKL  226 (266)
Q Consensus       177 SlEMs~~ql~~R~ls~~t~~~~s~I~~~~l~~-g~---l~~~e~~~i~~a~~~l  226 (266)
T Consensus       215 sT--SDrss~eR~~AAy~ATaI----AEYFRDQGk~VlLmmDSlTRfARA~REi  262 (430)
T TIGR02546       215 ST--SDRSSLERLKAAYTATAI----AEYFRDQGKRVLLMMDSLTRFARALREI  262 (430)
T ss_pred             EC--CCCCHHHHHHHHHHHHHH----HHHHHHCCCEEEEEEECHHHHHHHHHHH
T ss_conf             07--986679999998788799----9999973990798840277999998778