HHsearch alignment for GI: 254781149 and conserved domain: TIGR03305
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=95.70 E-value=0.0086 Score=39.69 Aligned_cols=52 Identities=19% Similarity=0.252 Sum_probs=40.1
Q ss_pred CCCCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 85111377777655301683688706874148899999999963022323641
Q gi|254781149|r 124 DIKWGLQSVDHLMGGVQLRELILIGARPSMGKTTFALSTALHMAMSGHGVAFF 176 (266)
Q Consensus 124 Gi~TG~~~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a~~g~~Vl~f 176 (266)
T Consensus 121 ~l~TGIkaID~l~p-igrGqr~gIfggaGvGKT~Ll~e~i~n~~~~~~~v~V~ 172 (449)
T TIGR03305 121 VFETGIKAIDVLVP-LERGGKAGLFGGAGVGKTVLLTEMIHNMVGQHQGVSIF 172 (449)
T ss_pred CEECCCEEHHHCCC-CCCCCEEEEECCCCCCCCCHHHHHHHHHHHHCCCEEEE
T ss_conf 40028440230245-24575656652799984101899998656414886899