HHsearch alignment for GI: 254781149 and conserved domain: TIGR03410
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=91.61 E-value=0.34 Score=28.54 Aligned_cols=123 Identities=17% Similarity=0.136 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHH-------CCCC-------------EEEE------CCCCCH
Q ss_conf 3777776553016836887068741488999999999630-------2232-------------3641------167534
Q gi|254781149|r 129 LQSVDHLMGGVQLRELILIGARPSMGKTTFALSTALHMAM-------SGHG-------------VAFF------SLEMDR 182 (266)
Q Consensus 129 ~~~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a~-------~g~~-------------Vl~f------SlEMs~ 182 (266)
T Consensus 13 ~~~L~~vs~~v~~Gei~~liGpNGaGKSTL~~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~r~gig~v~Q~~~lf~~lTV 92 (230)
T TIGR03410 13 SHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGIAYVPQGREIFPRLTV 92 (230)
T ss_pred EEEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCEECCCCCHHHHHHCCEEEECCCCCCCCCCCH
T ss_conf 66888717799999799999999940999999997799999549999999999999899998295993777425767889
Q ss_pred HHHH---------------HHHHHHHHCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCH-----H
Q ss_conf 8999---------------9999963022323478555017889989999999999999729954747998898-----9
Q gi|254781149|r 183 EKLG---------------ARALSNLLYPSSSRIPYLNLIRGEINQEQYRISQGICEKLQDFPLIIDDRPSPGI-----M 242 (266)
Q Consensus 183 ~ql~---------------~R~ls~~t~~~~s~I~~~~l~~g~l~~~e~~~i~~a~~~l~~~pl~IdD~~~~ti-----~ 242 (266)
T Consensus 93 ~Enl~~~~~~~~~~~~~~~~~~~~~~~~l----~~~~~r~~~~LSGGq~Qrv~iAraL~~~P~lLlLDEPt~gLD~~~~~ 168 (230)
T TIGR03410 93 EENLLTGLAALPRRSRKIPDEIYELFPVL----KEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIK 168 (230)
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHH----HHHHHCCHHHCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHH
T ss_conf 99999999874966788999999999999----99983851119999999999999996299889993852269999999
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 9999999999994
Q gi|254781149|r 243 EFVHVANGLRNKH 255 (266)
Q Consensus 243 ~ira~aR~~k~k~ 255 (266)
T Consensus 169 ~i~~~i~~l~~~~ 181 (230)
T TIGR03410 169 DIGRVIRRLRAEG 181 (230)
T ss_pred HHHHHHHHHHHCC
T ss_conf 9999999999717