>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.

Probab=95.22 E-value=0.2 Score=30.16 Aligned_cols=123 Identities=16% Similarity=0.121 Sum_probs=74.8 Q ss_pred HHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHH-HCC--------------------------CCE-EE------- Q ss_conf 7777655301683688706874148899999999963-022--------------------------323-64------- Q gi|254781149|r 131 SVDHLMGGVQLRELILIGARPSMGKTTFALSTALHMA-MSG--------------------------HGV-AF------- 175 (266) Q Consensus 131 ~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a-~~g--------------------------~~V-l~------- 175 (266) T Consensus 39 AV~dvsl~I~~GEi~~lvGpSGsGKSTLLr~i~GL~~pt~G~I~i~~~~~~~d~~~~~~~~lr~~R~~~IgmVFQ~~aL~ 118 (382) T TIGR03415 39 GVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFALM 118 (382) T ss_pred EEECCEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHCCCCEEEEECCCCCC T ss_conf 89651748879989999999973499999999759998852999926864224565998998763057669996378646 Q ss_pred ----------ECCC---CCHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCHH Q ss_conf ----------1167---534899999999630223234785550178899899999999999997299547479988989 Q gi|254781149|r 176 ----------FSLE---MDREKLGARALSNLLYPSSSRIPYLNLIRGEINQEQYRISQGICEKLQDFPLIIDDRPSPGIM 242 (266) Q Consensus 176 ----------fSlE---Ms~~ql~~R~ls~~t~~~~s~I~~~~l~~g~l~~~e~~~i~~a~~~l~~~pl~IdD~~~~ti~ 242 (266) T Consensus 119 P~~TV~eNia~~L~~~g~~~~e~~~rv~e~L~~VgL~~~--~~~yP~eLSGGqqQRVaIARALa~~P~iLLmDEPfsaLD 196 (382) T TIGR03415 119 PWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQW--ADKKPGELSGGMQQRVGLARAFAMDADILLMDEPFSALD 196 (382) T ss_pred CCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHH--HHCCHHHCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCC T ss_conf 568199999899988699999999999999873598465--547955579889999999999863899899708876559 Q ss_pred H-----HHHHHHHHHHHH Q ss_conf 9-----999999999994 Q gi|254781149|r 243 E-----FVHVANGLRNKH 255 (266) Q Consensus 243 ~-----ira~aR~~k~k~ 255 (266) T Consensus 197 ~~~r~~l~~~l~~L~~~~ 214 (382) T TIGR03415 197 PLIRTQLQDELLELQAKL 214 (382) T ss_pred HHHHHHHHHHHHHHHHHH T ss_conf 999999999999999986

HHsearch alignment for GI: 254781149 and conserved domain: TIGR03415