HHsearch alignment for GI: 254781149 and conserved domain: TIGR03499

Probab=96.54  E-value=0.017  Score=37.69  Aligned_cols=85  Identities=19%  Similarity=0.219  Sum_probs=55.3

Q ss_pred             CCCEEEEECCCCHHHHHHHHHHHHHHHHC-C-CCEEEECCCCC---HHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCHHH
Q ss_conf             68368870687414889999999996302-2-32364116753---4899999999630223234785550178899899
Q gi|254781149|r  141 LRELILIGARPSMGKTTFALSTALHMAMS-G-HGVAFFSLEMD---REKLGARALSNLLYPSSSRIPYLNLIRGEINQEQ  215 (266)
Q Consensus       141 ~g~LiviaaRP~mGKTa~alnia~~~a~~-g-~~Vl~fSlEMs---~~ql~~R~ls~~t~~~~s~I~~~~l~~g~l~~~e  215 (266)
T Consensus       193 ~~~vi~lvGPTGVGKTTTiAKLAa~~~l~~~~~~V~lIT~DtyRigA~eQL-k~ya~i-----l~vp~~vv~----~~~~  262 (282)
T TIGR03499       193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGKKKVALITTDTYRIGAVEQL-KTYAKI-----LGVPVKVAR----DPKE  262 (282)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHH-HHHHHH-----HCCEEEEEC----CHHH
T ss_conf             672799977888757889999999999973899679998077767899999-999999-----597489939----9999


Q ss_pred             HHHHHHHHHHHHHCCCEEECCCC
Q ss_conf             99999999999729954747998
Q gi|254781149|r  216 YRISQGICEKLQDFPLIIDDRPS  238 (266)
Q Consensus       216 ~~~i~~a~~~l~~~pl~IdD~~~  238 (266)
T Consensus       263 ---l~~~l~~~~~~d~IlIDTaG  282 (282)
T TIGR03499       263 ---LAKALERLRDKDLILIDTAG  282 (282)
T ss_pred             ---HHHHHHHCCCCCEEEEECCC
T ss_conf             ---99999865798999981979