HHsearch alignment for GI: 254781149 and conserved domain: TIGR03600
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=100.00 E-value=0 Score=386.21 Aligned_cols=244 Identities=23% Similarity=0.349 Sum_probs=212.2
Q ss_pred HHHHHHHHC---CCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCCHHHHHHHHHHH
Q ss_conf 898986300---57785689999984067636899999999999999999999999999985114-44234545899999
Q gi|254781149|r 4 EIISHFESQ---TKISFSTYLNNLLTLASSISSEVINAARRVVQQWARITISQEAKALALHTSDP-TCNTATLIRKSMQS 79 (266)
Q Consensus 4 ~~~~~le~~---~~i~~~~YL~~L~~~~~s~~~~~~~ya~~i~e~~~rR~l~~~~~~~~~~~~~~-~~~~~~~~~~~e~~ 79 (266)
T Consensus 57 tl~~~l~~~~~~~~~gg~~yl~~L~~~~~s-~~n~~~ya~~v~e~~~~R~li~~~~~i~~~~~~~~~~~~~~~l~~~~~~ 135 (421)
T TIGR03600 57 TLADKLEAEGEAEKVGGLAYLAEISNNTPS-AANISSYARIVREKAKERKLIAACQRIIDLACSDGGQTAEQKVEEAQAA 135 (421)
T ss_pred HHHHHHHHCCCHHHHCCHHHHHHHHHCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
T ss_conf 999998625745541759999999854896-5669999999999999999999999999987366899999999999999
Q ss_pred HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHH-CCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHH
Q ss_conf 99999654431046655430116899999999999863-03666785111377777655301683688706874148899
Q gi|254781149|r 80 FEDIISEVHLTKNQCTGSSCISIANAATTAMKSAEQQK-KEGENPDIKWGLQSVDHLMGGVQLRELILIGARPSMGKTTF 158 (266)
Q Consensus 80 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~Gi~TG~~~LD~~~gG~~~g~LiviaaRP~mGKTa~ 158 (266)
T Consensus 136 l~~i~~~~~-----~~~~~~~~~~~~~~~~~~~ie~~~~~~~~~~Gi~TG~~~LD~~~~Gl~~g~LiIiaARPsmGKTaf 210 (421)
T TIGR03600 136 LLALTGMSD-----GQERGFVTFGEVLEDVVRDLDKRFNPKGELTGLSTGLPKLDRLTNGLVKGDLIVIGARPSMGKTTL 210 (421)
T ss_pred HHHHHHCCC-----CCCCCCEEHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHCCCCCCCEEEEEEECCCCHHHH
T ss_conf 999871345-----676774569999999999999997368986778788078999836999886899985467874599
Q ss_pred HHHHHHHHH-HCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHCCCEEECCC
Q ss_conf 999999963-0223236411675348999999996302232347855501788998999999999999972995474799
Q gi|254781149|r 159 ALSTALHMA-MSGHGVAFFSLEMDREKLGARALSNLLYPSSSRIPYLNLIRGEINQEQYRISQGICEKLQDFPLIIDDRP 237 (266)
Q Consensus 159 alnia~~~a-~~g~~Vl~fSlEMs~~ql~~R~ls~~t~~~~s~I~~~~l~~g~l~~~e~~~i~~a~~~l~~~pl~IdD~~ 237 (266)
T Consensus 211 alnia~n~A~~~g~~Vl~fSLEMs~eql~~R~la~~-----s~i~~~~i~~g~l~~~~~~~~~~a~~~l~~~~l~i~d~~ 285 (421)
T TIGR03600 211 ALNIAENVALREGKPVLFFSLEMSAEQLGERLLASK-----SGINTGNIRTGRFNDSDFNRLLNAVDRLSEKDLYIDDTG 285 (421)
T ss_pred HHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHH-----CCCCHHHHHCCCCCHHHHHHHHHHHHHHHCCCEEEECCC
T ss_conf 999999999866983899925799999999999985-----489776665289998999999999998616878996699
Q ss_pred CCCHHHHHHHHHHHHHHHHHH
Q ss_conf 889899999999999994799
Q gi|254781149|r 238 SPGIMEFVHVANGLRNKHTKM 258 (266)
Q Consensus 238 ~~ti~~ira~aR~~k~k~~~~ 258 (266)
T Consensus 286 ~~ti~~ir~~~r~~~~~~~~l 306 (421)
T TIGR03600 286 GLTVAQIRSIARRIKRKKGGL 306 (421)
T ss_pred CCCHHHHHHHHHHHHHHCCCC
T ss_conf 887678999999999862898