HHsearch alignment for GI: 254781149 and conserved domain: cd01122
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=99.94 E-value=4.1e-26 Score=202.37 Aligned_cols=133 Identities=20% Similarity=0.193 Sum_probs=109.4
Q ss_pred HCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHH-CCCCEEEECCCCCHHHHHHHHHHHHHC
Q ss_conf 3036667851113777776553016836887068741488999999999630-223236411675348999999996302
Q gi|254781149|r 117 KKEGENPDIKWGLQSVDHLMGGVQLRELILIGARPSMGKTTFALSTALHMAM-SGHGVAFFSLEMDREKLGARALSNLLY 195 (266)
Q Consensus 117 ~~~~~~~Gi~TG~~~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a~-~g~~Vl~fSlEMs~~ql~~R~ls~~t~ 195 (266)
T Consensus 5 ~~~~~~~~~~~pf~~LD~~~~Gl~~GeL~viaarpg~GKT~f~~~~a~~~~~~~g~~vl~~SlEm~~~~~~~Rlls~~~g 84 (271)
T cd01122 5 REALSNEEVWWPFPVLNKLTKGLRKGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISLEEPVVRTARRLLGQYAG 84 (271)
T ss_pred HCCCCCCCCCCCCHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHC
T ss_conf 17887556658816688873799998089999689986999999999999997699089997049999999999999829
Q ss_pred CCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHCC-CEEECC-CCCCHHHHHHHHHHHHHHHH
Q ss_conf 23234785550178899899999999999997299-547479-98898999999999999947
Q gi|254781149|r 196 PSSSRIPYLNLIRGEINQEQYRISQGICEKLQDFP-LIIDDR-PSPGIMEFVHVANGLRNKHT 256 (266)
Q Consensus 196 ~~~s~I~~~~l~~g~l~~~e~~~i~~a~~~l~~~p-l~IdD~-~~~ti~~ira~aR~~k~k~~ 256 (266)
T Consensus 85 -----~~~~~~~~~~~--~~~e~~~~~~~~~~~~~~l~i~d~~~~~~~~~i~~~ir~~~~~~~ 140 (271)
T cd01122 85 -----KRLHLPDTVFI--YTLEEFDAAFDEFEGTGRLFMYDSFGEYSMDSVLEKVRYMAVSHG 140 (271)
T ss_pred -----CCHHHCCCCCC--CHHHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHHHHHCC
T ss_conf -----97110344677--809999999999707998088789999889999999999998289