HHsearch alignment for GI: 254781149 and conserved domain: cd01122

>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=99.94  E-value=4.1e-26  Score=202.37  Aligned_cols=133  Identities=20%  Similarity=0.193  Sum_probs=109.4

Q ss_pred             HCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHH-CCCCEEEECCCCCHHHHHHHHHHHHHC
Q ss_conf             3036667851113777776553016836887068741488999999999630-223236411675348999999996302
Q gi|254781149|r  117 KKEGENPDIKWGLQSVDHLMGGVQLRELILIGARPSMGKTTFALSTALHMAM-SGHGVAFFSLEMDREKLGARALSNLLY  195 (266)
Q Consensus       117 ~~~~~~~Gi~TG~~~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a~-~g~~Vl~fSlEMs~~ql~~R~ls~~t~  195 (266)
T Consensus         5 ~~~~~~~~~~~pf~~LD~~~~Gl~~GeL~viaarpg~GKT~f~~~~a~~~~~~~g~~vl~~SlEm~~~~~~~Rlls~~~g   84 (271)
T cd01122           5 REALSNEEVWWPFPVLNKLTKGLRKGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISLEEPVVRTARRLLGQYAG   84 (271)
T ss_pred             HCCCCCCCCCCCCHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHC
T ss_conf             17887556658816688873799998089999689986999999999999997699089997049999999999999829


Q ss_pred             CCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHCC-CEEECC-CCCCHHHHHHHHHHHHHHHH
Q ss_conf             23234785550178899899999999999997299-547479-98898999999999999947
Q gi|254781149|r  196 PSSSRIPYLNLIRGEINQEQYRISQGICEKLQDFP-LIIDDR-PSPGIMEFVHVANGLRNKHT  256 (266)
Q Consensus       196 ~~~s~I~~~~l~~g~l~~~e~~~i~~a~~~l~~~p-l~IdD~-~~~ti~~ira~aR~~k~k~~  256 (266)
T Consensus        85 -----~~~~~~~~~~~--~~~e~~~~~~~~~~~~~~l~i~d~~~~~~~~~i~~~ir~~~~~~~  140 (271)
T cd01122          85 -----KRLHLPDTVFI--YTLEEFDAAFDEFEGTGRLFMYDSFGEYSMDSVLEKVRYMAVSHG  140 (271)
T ss_pred             -----CCHHHCCCCCC--CHHHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHHHHHCC
T ss_conf             -----97110344677--809999999999707998088789999889999999999998289