HHsearch alignment for GI: 254781149 and conserved domain: cd01125
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=97.97 E-value=7.6e-05 Score=54.00 Aligned_cols=55 Identities=29% Similarity=0.292 Sum_probs=46.1
Q ss_pred CCEEEEECCCCHHHHHHHHHHHHHHHHC----C--------CCEEEECCCCCHHHHHHHHHHHHHCC
Q ss_conf 8368870687414889999999996302----2--------32364116753489999999963022
Q gi|254781149|r 142 RELILIGARPSMGKTTFALSTALHMAMS----G--------HGVAFFSLEMDREKLGARALSNLLYP 196 (266)
Q Consensus 142 g~LiviaaRP~mGKTa~alnia~~~a~~----g--------~~Vl~fSlEMs~~ql~~R~ls~~t~~ 196 (266)
T Consensus 1 G~v~~l~g~gG~GKS~lal~lAl~vA~G~~~~g~~~~~~~~G~Vly~~~Ed~~~~l~rRl~a~~~~~ 67 (239)
T cd01125 1 GYVSALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLSAEDPREEIHRRLEAILQHL 67 (239)
T ss_pred CEEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHC
T ss_conf 9389998089988899999999999759965689854687761999978899899999999999863