HHsearch alignment for GI: 254781149 and conserved domain: cd01125

>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=97.97  E-value=7.6e-05  Score=54.00  Aligned_cols=55  Identities=29%  Similarity=0.292  Sum_probs=46.1

Q ss_pred             CCEEEEECCCCHHHHHHHHHHHHHHHHC----C--------CCEEEECCCCCHHHHHHHHHHHHHCC
Q ss_conf             8368870687414889999999996302----2--------32364116753489999999963022
Q gi|254781149|r  142 RELILIGARPSMGKTTFALSTALHMAMS----G--------HGVAFFSLEMDREKLGARALSNLLYP  196 (266)
Q Consensus       142 g~LiviaaRP~mGKTa~alnia~~~a~~----g--------~~Vl~fSlEMs~~ql~~R~ls~~t~~  196 (266)
T Consensus         1 G~v~~l~g~gG~GKS~lal~lAl~vA~G~~~~g~~~~~~~~G~Vly~~~Ed~~~~l~rRl~a~~~~~   67 (239)
T cd01125           1 GYVSALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLSAEDPREEIHRRLEAILQHL   67 (239)
T ss_pred             CEEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHC
T ss_conf             9389998089988899999999999759965689854687761999978899899999999999863