HHsearch alignment for GI: 254781149 and conserved domain: cd01136
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=92.15 E-value=0.11 Score=31.87 Aligned_cols=43 Identities=23% Similarity=0.201 Sum_probs=35.5
Q ss_pred CCCCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHH
Q ss_conf 85111377777655301683688706874148899999999963
Q gi|254781149|r 124 DIKWGLQSVDHLMGGVQLRELILIGARPSMGKTTFALSTALHMA 167 (266)
Q Consensus 124 Gi~TG~~~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a 167 (266)
T Consensus 52 ~l~TGI~~ID~l~p-igrGQR~~Ifg~~g~GKt~Ll~~i~~~~~ 94 (326)
T cd01136 52 VLPTGVRAIDGLLT-VGKGQRLGIFAGSGVGKSTLLGMIARGTT 94 (326)
T ss_pred CCCCCCCHHCCCCC-CCCCCEEEEECCCCCCCCHHHHHHHHCCC
T ss_conf 51157704200266-24798787436999984667876864146