HHsearch alignment for GI: 254781149 and conserved domain: cd01136

>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=92.15  E-value=0.11  Score=31.87  Aligned_cols=43  Identities=23%  Similarity=0.201  Sum_probs=35.5

Q ss_pred             CCCCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHH
Q ss_conf             85111377777655301683688706874148899999999963
Q gi|254781149|r  124 DIKWGLQSVDHLMGGVQLRELILIGARPSMGKTTFALSTALHMA  167 (266)
Q Consensus       124 Gi~TG~~~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a  167 (266)
T Consensus        52 ~l~TGI~~ID~l~p-igrGQR~~Ifg~~g~GKt~Ll~~i~~~~~   94 (326)
T cd01136          52 VLPTGVRAIDGLLT-VGKGQRLGIFAGSGVGKSTLLGMIARGTT   94 (326)
T ss_pred             CCCCCCCHHCCCCC-CCCCCEEEEECCCCCCCCHHHHHHHHCCC
T ss_conf             51157704200266-24798787436999984667876864146