HHsearch alignment for GI: 254781149 and conserved domain: cd03226
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=91.38 E-value=0.79 Score=26.00 Aligned_cols=111 Identities=22% Similarity=0.217 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHH-HC------CC---------CEEEECCC-------CC-HH
Q ss_conf 1377777655301683688706874148899999999963-02------23---------23641167-------53-48
Q gi|254781149|r 128 GLQSVDHLMGGVQLRELILIGARPSMGKTTFALSTALHMA-MS------GH---------GVAFFSLE-------MD-RE 183 (266)
Q Consensus 128 G~~~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a-~~------g~---------~Vl~fSlE-------Ms-~~ 183 (266)
T Consensus 12 ~~~vL~~vsl~i~~Gei~~iiG~nGaGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~~ 91 (205)
T cd03226 12 GTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKERRKSIGYVMQDVDYQLFTDSVRE 91 (205)
T ss_pred CCEEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCHHHHHCCEEEEEECCCCCCCHHHHHH
T ss_conf 99786403788869989999889999899999999568577787389999999657874448999627864420647999
Q ss_pred H-------------HHHHHHHHHHCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCHHH
Q ss_conf 9-------------99999996302232347855501788998999999999999972995474799889899
Q gi|254781149|r 184 K-------------LGARALSNLLYPSSSRIPYLNLIRGEINQEQYRISQGICEKLQDFPLIIDDRPSPGIME 243 (266)
Q Consensus 184 q-------------l~~R~ls~~t~~~~s~I~~~~l~~g~l~~~e~~~i~~a~~~l~~~pl~IdD~~~~ti~~ 243 (266)
T Consensus 92 ~l~~~~~~~~~~~~~~~~~l~~~---~l~~~--~~~~~~~LSGGqkQrv~iA~aL~~~P~illLDEPt~gLD~ 159 (205)
T cd03226 92 ELLLGLKELDAGNEQAETVLKDL---DLYAL--KERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDY 159 (205)
T ss_pred HHHHCCCCCCCHHHHHHHHHHHC---CCCHH--HHCCHHHCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCH
T ss_conf 99704878560799999999976---99235--5389112899999999999999759999999799765899