HHsearch alignment for GI: 254781149 and conserved domain: cd03228
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.28 E-value=0.016 Score=37.83 Aligned_cols=112 Identities=13% Similarity=0.089 Sum_probs=72.6
Q ss_pred HHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEECCC---CCHHHHHHHHHHHHHCCCCCC-CCHHH
Q ss_conf 77777655301683688706874148899999999963022323641167---534899999999630223234-78555
Q gi|254781149|r 130 QSVDHLMGGVQLRELILIGARPSMGKTTFALSTALHMAMSGHGVAFFSLE---MDREKLGARALSNLLYPSSSR-IPYLN 205 (266)
Q Consensus 130 ~~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a~~g~~Vl~fSlE---Ms~~ql~~R~ls~~t~~~~s~-I~~~~ 205 (266)
T Consensus 16 ~iL~~isl~i~~Ge~i~ivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~-i---~~v~Q~~~lf~~t 91 (171)
T cd03228 16 PVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKN-I---AYVPQDPFLFSGT 91 (171)
T ss_pred CCEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHH-E---EEECCCCCCCCCC
T ss_conf 61677189985998999999999839999999976775897489999999885998998631-8---9996668437577
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCHHHHH
Q ss_conf 0178899899999999999997299547479988989999
Q gi|254781149|r 206 LIRGEINQEQYRISQGICEKLQDFPLIIDDRPSPGIMEFV 245 (266)
Q Consensus 206 l~~g~l~~~e~~~i~~a~~~l~~~pl~IdD~~~~ti~~ir 245 (266)
T Consensus 92 v~eNiLSgGq~Qri~lARal~~~p~illlDEpts~LD~~~ 131 (171)
T cd03228 92 IRENILSGGQRQRIAIARALLRDPPILILDEATSALDPET 131 (171)
T ss_pred HHHHCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHH
T ss_conf 9997744889999999999974899899957766799899