>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

Probab=93.31 E-value=0.14 Score=31.29 Aligned_cols=124 Identities=13% Similarity=0.139 Sum_probs=70.3 Q ss_pred HHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHH-CCCCEEEECCCCCHHH--H--HHHHHHHHHCCCCCCCCH Q ss_conf 3777776553016836887068741488999999999630-2232364116753489--9--999999630223234785 Q gi|254781149|r 129 LQSVDHLMGGVQLRELILIGARPSMGKTTFALSTALHMAM-SGHGVAFFSLEMDREK--L--GARALSNLLYPSSSRIPY 203 (266) Q Consensus 129 ~~~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a~-~g~~Vl~fSlEMs~~q--l--~~R~ls~~t~~~~s~I~~ 203 (266) T Consensus 13 ~~~l~~vs~~i~~Ge~~~ivGpSG~GKSTllr~i~-Gl~~p~~G~I~~~g~~i~~~~~~~~~~rr~ig~vFQ-~~~L~p~ 90 (178) T cd03229 13 KTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIA-GLEEPDSGSILIDGEDLTDLEDELPPLRRRIGMVFQ-DFALFPH 90 (178) T ss_pred EEEECCCEEEECCCCEEEEECCCCCHHHHHHHHHH-CCCCCCCEEEEECCEECCCCCCHHHHHCCCEEEEEC-CCCCCCC T ss_conf 99983707698899899999999983999999998-599999639999999998886102454177599926-9988998 Q ss_pred ----HHCCCCCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCHH-----HHHHHHHHHHHHH Q ss_conf ----550178899899999999999997299547479988989-----9999999999994 Q gi|254781149|r 204 ----LNLIRGEINQEQYRISQGICEKLQDFPLIIDDRPSPGIM-----EFVHVANGLRNKH 255 (266) Q Consensus 204 ----~~l~~g~l~~~e~~~i~~a~~~l~~~pl~IdD~~~~ti~-----~ira~aR~~k~k~ 255 (266) T Consensus 91 ~tv~eNv~~~-LSGGq~QRvaIARAL~~~P~ill~DEPts~LD~~~~~~i~~~l~~l~~~~ 150 (178) T cd03229 91 LTVLENIALG-LSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQL 150 (178) T ss_pred CCHHHHHCEE-CCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHH T ss_conf 9289960081-77268899999999852999999708976479999999999999999964

HHsearch alignment for GI: 254781149 and conserved domain: cd03229