HHsearch alignment for GI: 254781149 and conserved domain: cd03231
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=94.73 E-value=0.33 Score=28.60 Aligned_cols=108 Identities=18% Similarity=0.153 Sum_probs=65.8
Q ss_pred HHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHH-HHCC------C-----------CEEEE------CCCCC-----
Q ss_conf 777765530168368870687414889999999996-3022------3-----------23641------16753-----
Q gi|254781149|r 131 SVDHLMGGVQLRELILIGARPSMGKTTFALSTALHM-AMSG------H-----------GVAFF------SLEMD----- 181 (266)
Q Consensus 131 ~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~-a~~g------~-----------~Vl~f------SlEMs----- 181 (266)
T Consensus 15 il~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~sG~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~ltv~en~ 94 (201)
T cd03231 15 LFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARGLLYLGHAPGIKTTLSVLENL 94 (201)
T ss_pred EEECCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECCEECCCCCHHHHHHEEEECCCCCCCCCCCHHHHH
T ss_conf 99530788879959999999999999999999667788852999999983314877671179978765455787899999
Q ss_pred -------HHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCHHH
Q ss_conf -------48999999996302232347855501788998999999999999972995474799889899
Q gi|254781149|r 182 -------REKLGARALSNLLYPSSSRIPYLNLIRGEINQEQYRISQGICEKLQDFPLIIDDRPSPGIME 243 (266)
Q Consensus 182 -------~~ql~~R~ls~~t~~~~s~I~~~~l~~g~l~~~e~~~i~~a~~~l~~~pl~IdD~~~~ti~~ 243 (266)
T Consensus 95 ~~~~~~~~~~~~~~~L~~~---~l~~~--~~~~~~~LSgGqkqRv~lA~al~~~p~llllDEPt~gLD~ 158 (201)
T cd03231 95 RFWHADHSDEQVEEALARV---GLNGF--EDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDK 158 (201)
T ss_pred HHHHHHCCHHHHHHHHHHC---CCCHH--HCCCHHHCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCH
T ss_conf 8753223699999999985---99103--2588234799999999999999749999998088655799