HHsearch alignment for GI: 254781149 and conserved domain: cd03232
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.25 E-value=0.04 Score=35.01 Aligned_cols=118 Identities=18% Similarity=0.193 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHCC---CCEEEECCCCCHHHHHHHHHHHHHCCCCCC-----
Q ss_conf 377777655301683688706874148899999999963022---323641167534899999999630223234-----
Q gi|254781149|r 129 LQSVDHLMGGVQLRELILIGARPSMGKTTFALSTALHMAMSG---HGVAFFSLEMDREKLGARALSNLLYPSSSR----- 200 (266)
Q Consensus 129 ~~~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a~~g---~~Vl~fSlEMs~~ql~~R~ls~~t~~~~s~----- 200 (266)
T Consensus 20 ~~vL~~is~~i~~Ge~~~llGpnGaGKSTLl~~l~g~-~~~~~~~G~i~~~g~~~~~--~~~~~ig---yv~q~~~~~~~ 93 (192)
T cd03232 20 RQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGR-KTAGVITGEILINGRPLDK--NFQRSTG---YVEQQDVHSPN 93 (192)
T ss_pred EEEEECCEEEEECCEEEEEECCCCCCHHHHHHHHHCC-CCCCCEEEEEEECCEECCH--HHHHHEE---EEECCHHCCCC
T ss_conf 7999883889928839999999999889999998379-8788317899987827667--7562279---99411330734
Q ss_pred ------CCHHHCCCCCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCH-----HHHHHHHHHHHH
Q ss_conf ------78555017889989999999999999729954747998898-----999999999999
Q gi|254781149|r 201 ------IPYLNLIRGEINQEQYRISQGICEKLQDFPLIIDDRPSPGI-----MEFVHVANGLRN 253 (266)
Q Consensus 201 ------I~~~~l~~g~l~~~e~~~i~~a~~~l~~~pl~IdD~~~~ti-----~~ira~aR~~k~ 253 (266)
T Consensus 94 ~tv~e~l~~~~-~l~~LS~gqrqrv~iA~aL~~~P~lllLDEPt~gLD~~~~~~i~~~l~~l~~ 156 (192)
T cd03232 94 LTVREALRFSA-LLRGLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLAD 156 (192)
T ss_pred CHHHHHHHHHH-HHHCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 54999998667-7733797676589999998449988998488768898999999999999996