HHsearch alignment for GI: 254781149 and conserved domain: cd03237

>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=94.66  E-value=0.43  Score=27.87  Aligned_cols=120  Identities=16%  Similarity=0.091  Sum_probs=70.5

Q ss_pred             HHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHH-------CCCCEEEE------CCCCCHHHHHHHHHHHHHCCCC----
Q ss_conf             553016836887068741488999999999630-------22323641------1675348999999996302232----
Q gi|254781149|r  136 MGGVQLRELILIGARPSMGKTTFALSTALHMAM-------SGHGVAFF------SLEMDREKLGARALSNLLYPSS----  198 (266)
Q Consensus       136 ~gG~~~g~LiviaaRP~mGKTa~alnia~~~a~-------~g~~Vl~f------SlEMs~~ql~~R~ls~~t~~~~----  198 (266)
T Consensus        19 ~Gti~~GEiv~liGpNGaGKSTLlk~l~Gll~p~~G~I~~~g~~i~~~pq~~~~~~~~tv~~~l~~~~~~~~~~~~~~~e   98 (246)
T cd03237          19 GGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKPQYIKADYEGTVRDLLSSITKDFYTHPYFKTE   98 (246)
T ss_pred             CCCCCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHCCCCCCCHHHHHHHHHHHCCCCHHHHHH
T ss_conf             88465798999997999769999999977878886079989820576874332577727999999886431212799999


Q ss_pred             --CCCCHHHCC---CCCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCHH-----HHHHHHHHHHHHH
Q ss_conf             --347855501---78899899999999999997299547479988989-----9999999999994
Q gi|254781149|r  199 --SRIPYLNLI---RGEINQEQYRISQGICEKLQDFPLIIDDRPSPGIM-----EFVHVANGLRNKH  255 (266)
Q Consensus       199 --s~I~~~~l~---~g~l~~~e~~~i~~a~~~l~~~pl~IdD~~~~ti~-----~ira~aR~~k~k~  255 (266)
T Consensus        99 ~~~~l~l~~~~~r~~~~LSGGqkQRv~iA~aL~~~p~ilLLDEPts~LD~~~~~~i~~~i~~l~~~~  165 (246)
T cd03237          99 IAKPLQIEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENN  165 (246)
T ss_pred             HHHHCCCHHHHCCCHHHCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHC
T ss_conf             9988499567648700289859999999999841999999848987689999999999999999867