HHsearch alignment for GI: 254781149 and conserved domain: cd03252

>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=92.50  E-value=0.25  Score=29.46  Aligned_cols=115  Identities=17%  Similarity=0.153  Sum_probs=67.0

Q ss_pred             HHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHH-HHC------CCC----------------------------
Q ss_conf             137777765530168368870687414889999999996-302------232----------------------------
Q gi|254781149|r  128 GLQSVDHLMGGVQLRELILIGARPSMGKTTFALSTALHM-AMS------GHG----------------------------  172 (266)
Q Consensus       128 G~~~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~-a~~------g~~----------------------------  172 (266)
T Consensus        14 ~~~~L~~is~~i~~G~~vaivG~sGsGKSTll~ll~gl~~p~~G~I~i~g~di~~~~~~~~r~~i~~v~Q~~~lf~~Ti~   93 (237)
T cd03252          14 GPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVGVVLQENVLFNRSIR   93 (237)
T ss_pred             CCCCEECCEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHHCEEEECCCCCCCCCHH
T ss_conf             95725150899879999999999998599999999677657987899999995518999998601899587715578289


Q ss_pred             --EEEECCCCCHHHHHHHHHHHHHCCCC--CCCCHH--H-CC-CC-CCCHHHHHHHHHHHHHHHHCCCEEECCCCCCHHH
Q ss_conf             --36411675348999999996302232--347855--5-01-78-8998999999999999972995474799889899
Q gi|254781149|r  173 --VAFFSLEMDREKLGARALSNLLYPSS--SRIPYL--N-LI-RG-EINQEQYRISQGICEKLQDFPLIIDDRPSPGIME  243 (266)
Q Consensus       173 --Vl~fSlEMs~~ql~~R~ls~~t~~~~--s~I~~~--~-l~-~g-~l~~~e~~~i~~a~~~l~~~pl~IdD~~~~ti~~  243 (266)
T Consensus        94 eNi~~g~~~~~~~~i~~a-~~-~~~l~~~i~~l~~g~~t~i~~~g~~LSgGqkQRlalARall~~~~illlDEpts~LD~  171 (237)
T cd03252          94 DNIALADPGMSMERVIEA-AK-LAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDY  171 (237)
T ss_pred             HHHHCCCCCCCHHHHHHH-HH-HHCCHHHHHHCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCH
T ss_conf             887238999999999999-99-9685444663666662055797884899999999999999669999999486456898


Q ss_pred             H
Q ss_conf             9
Q gi|254781149|r  244 F  244 (266)
Q Consensus       244 i  244 (266)
T Consensus       172 ~  172 (237)
T cd03252         172 E  172 (237)
T ss_pred             H
T ss_conf             9