HHsearch alignment for GI: 254781149 and conserved domain: cd03252
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=92.50 E-value=0.25 Score=29.46 Aligned_cols=115 Identities=17% Similarity=0.153 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHH-HHC------CCC----------------------------
Q ss_conf 137777765530168368870687414889999999996-302------232----------------------------
Q gi|254781149|r 128 GLQSVDHLMGGVQLRELILIGARPSMGKTTFALSTALHM-AMS------GHG---------------------------- 172 (266)
Q Consensus 128 G~~~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~-a~~------g~~---------------------------- 172 (266)
T Consensus 14 ~~~~L~~is~~i~~G~~vaivG~sGsGKSTll~ll~gl~~p~~G~I~i~g~di~~~~~~~~r~~i~~v~Q~~~lf~~Ti~ 93 (237)
T cd03252 14 GPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVGVVLQENVLFNRSIR 93 (237)
T ss_pred CCCCEECCEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHHCEEEECCCCCCCCCHH
T ss_conf 95725150899879999999999998599999999677657987899999995518999998601899587715578289
Q ss_pred --EEEECCCCCHHHHHHHHHHHHHCCCC--CCCCHH--H-CC-CC-CCCHHHHHHHHHHHHHHHHCCCEEECCCCCCHHH
Q ss_conf --36411675348999999996302232--347855--5-01-78-8998999999999999972995474799889899
Q gi|254781149|r 173 --VAFFSLEMDREKLGARALSNLLYPSS--SRIPYL--N-LI-RG-EINQEQYRISQGICEKLQDFPLIIDDRPSPGIME 243 (266)
Q Consensus 173 --Vl~fSlEMs~~ql~~R~ls~~t~~~~--s~I~~~--~-l~-~g-~l~~~e~~~i~~a~~~l~~~pl~IdD~~~~ti~~ 243 (266)
T Consensus 94 eNi~~g~~~~~~~~i~~a-~~-~~~l~~~i~~l~~g~~t~i~~~g~~LSgGqkQRlalARall~~~~illlDEpts~LD~ 171 (237)
T cd03252 94 DNIALADPGMSMERVIEA-AK-LAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDY 171 (237)
T ss_pred HHHHCCCCCCCHHHHHHH-HH-HHCCHHHHHHCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCH
T ss_conf 887238999999999999-99-9685444663666662055797884899999999999999669999999486456898
Q ss_pred H
Q ss_conf 9
Q gi|254781149|r 244 F 244 (266)
Q Consensus 244 i 244 (266)
T Consensus 172 ~ 172 (237)
T cd03252 172 E 172 (237)
T ss_pred H
T ss_conf 9