HHsearch alignment for GI: 254781149 and conserved domain: cd03266
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=91.63 E-value=0.51 Score=27.34 Aligned_cols=115 Identities=17% Similarity=0.109 Sum_probs=69.2
Q ss_pred CHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHH-CC-----------------CCEEEE------CCCCCH
Q ss_conf 113777776553016836887068741488999999999630-22-----------------323641------167534
Q gi|254781149|r 127 WGLQSVDHLMGGVQLRELILIGARPSMGKTTFALSTALHMAM-SG-----------------HGVAFF------SLEMDR 182 (266)
Q Consensus 127 TG~~~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a~-~g-----------------~~Vl~f------SlEMs~ 182 (266)
T Consensus 16 ~~~~al~~vs~~i~~Gei~gllG~NGaGKSTllk~i~Gl~~p~~G~i~i~G~d~~~~~~~~r~~ig~~~q~~~l~~~ltv 95 (218)
T cd03266 16 KTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARRRLGFVSDSTGLYDRLTA 95 (218)
T ss_pred CCEEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCHHHHHCCEEEECCCCCCCCCCCH
T ss_conf 76898726278985982999999999849999999977977897489999999886979896287998077667999989
Q ss_pred HHHHHHHHHHHHCCC-------------CCCCC-HHHCCCCCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCHH
Q ss_conf 899999999630223-------------23478-5550178899899999999999997299547479988989
Q gi|254781149|r 183 EKLGARALSNLLYPS-------------SSRIP-YLNLIRGEINQEQYRISQGICEKLQDFPLIIDDRPSPGIM 242 (266)
Q Consensus 183 ~ql~~R~ls~~t~~~-------------~s~I~-~~~l~~g~l~~~e~~~i~~a~~~l~~~pl~IdD~~~~ti~ 242 (266)
T Consensus 96 ~e~l~-~~~~~~g~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~kqrv~la~al~~~P~lliLDEPt~gLD 168 (218)
T cd03266 96 RENLE-YFAGLYGLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLD 168 (218)
T ss_pred HHHHH-HHHHHCCCCHHHHHHHHHHHHHHCCCHHHHCCCHHHCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCC
T ss_conf 99999-99998499989999999999997499557514432278268899999999866998999979876769