HHsearch alignment for GI: 254781149 and conserved domain: cd03266

>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=91.63  E-value=0.51  Score=27.34  Aligned_cols=115  Identities=17%  Similarity=0.109  Sum_probs=69.2

Q ss_pred             CHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHH-CC-----------------CCEEEE------CCCCCH
Q ss_conf             113777776553016836887068741488999999999630-22-----------------323641------167534
Q gi|254781149|r  127 WGLQSVDHLMGGVQLRELILIGARPSMGKTTFALSTALHMAM-SG-----------------HGVAFF------SLEMDR  182 (266)
Q Consensus       127 TG~~~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a~-~g-----------------~~Vl~f------SlEMs~  182 (266)
T Consensus        16 ~~~~al~~vs~~i~~Gei~gllG~NGaGKSTllk~i~Gl~~p~~G~i~i~G~d~~~~~~~~r~~ig~~~q~~~l~~~ltv   95 (218)
T cd03266          16 KTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARRRLGFVSDSTGLYDRLTA   95 (218)
T ss_pred             CCEEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCHHHHHCCEEEECCCCCCCCCCCH
T ss_conf             76898726278985982999999999849999999977977897489999999886979896287998077667999989


Q ss_pred             HHHHHHHHHHHHCCC-------------CCCCC-HHHCCCCCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCHH
Q ss_conf             899999999630223-------------23478-5550178899899999999999997299547479988989
Q gi|254781149|r  183 EKLGARALSNLLYPS-------------SSRIP-YLNLIRGEINQEQYRISQGICEKLQDFPLIIDDRPSPGIM  242 (266)
Q Consensus       183 ~ql~~R~ls~~t~~~-------------~s~I~-~~~l~~g~l~~~e~~~i~~a~~~l~~~pl~IdD~~~~ti~  242 (266)
T Consensus        96 ~e~l~-~~~~~~g~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~kqrv~la~al~~~P~lliLDEPt~gLD  168 (218)
T cd03266          96 RENLE-YFAGLYGLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLD  168 (218)
T ss_pred             HHHHH-HHHHHCCCCHHHHHHHHHHHHHHCCCHHHHCCCHHHCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCC
T ss_conf             99999-99998499989999999999997499557514432278268899999999866998999979876769