HHsearch alignment for GI: 254781149 and conserved domain: cd03268
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=90.15 E-value=0.57 Score=26.99 Aligned_cols=122 Identities=19% Similarity=0.104 Sum_probs=73.6
Q ss_pred HHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHH-------CCC----------CEEE------ECCCCCHHHHH
Q ss_conf 777776553016836887068741488999999999630-------223----------2364------11675348999
Q gi|254781149|r 130 QSVDHLMGGVQLRELILIGARPSMGKTTFALSTALHMAM-------SGH----------GVAF------FSLEMDREKLG 186 (266)
Q Consensus 130 ~~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a~-------~g~----------~Vl~------fSlEMs~~ql~ 186 (266)
T Consensus 14 ~al~~vs~~v~~Gei~gllG~NGaGKSTLl~~i~Gl~~p~~G~i~i~G~~~~~~~~~~~~ig~~~~~~~l~~~ltv~e~l 93 (208)
T cd03268 14 RVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEALRRIGALIEAPGFYPNLTARENL 93 (208)
T ss_pred EEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCHHHHHHEEEEECCCCCCCCCCHHHHH
T ss_conf 98715166886981999999999999999999957837898999999999997968571089994777678988999999
Q ss_pred HHHHHHHHCCCCCC---------CC-HHHCCCCCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCHH-----HHHHHHHHH
Q ss_conf 99999630223234---------78-5550178899899999999999997299547479988989-----999999999
Q gi|254781149|r 187 ARALSNLLYPSSSR---------IP-YLNLIRGEINQEQYRISQGICEKLQDFPLIIDDRPSPGIM-----EFVHVANGL 251 (266)
Q Consensus 187 ~R~ls~~t~~~~s~---------I~-~~~l~~g~l~~~e~~~i~~a~~~l~~~pl~IdD~~~~ti~-----~ira~aR~~ 251 (266)
T Consensus 94 -~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~kqrl~la~al~~~p~lliLDEPt~GLD~~~~~~i~~~l~~l 172 (208)
T cd03268 94 -RLLARLLGIRKKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSL 172 (208)
T ss_pred -HHHHHHCCCCHHHHHHHHHHCCCCHHHCCCHHHCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHH
T ss_conf -9999874998899999999809950336903569999999999999985699999993887689999999999999999
Q ss_pred H
Q ss_conf 9
Q gi|254781149|r 252 R 252 (266)
Q Consensus 252 k 252 (266)
T Consensus 173 ~ 173 (208)
T cd03268 173 R 173 (208)
T ss_pred H
T ss_conf 9