>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

Probab=92.64 E-value=0.76 Score=26.09 Aligned_cols=123 Identities=20% Similarity=0.147 Sum_probs=73.9 Q ss_pred HHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHH-C------CC--------CEEEE------CCCCCHHHHHH Q ss_conf 3777776553016836887068741488999999999630-2------23--------23641------16753489999 Q gi|254781149|r 129 LQSVDHLMGGVQLRELILIGARPSMGKTTFALSTALHMAM-S------GH--------GVAFF------SLEMDREKLGA 187 (266) Q Consensus 129 ~~~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a~-~------g~--------~Vl~f------SlEMs~~ql~~ 187 (266) T Consensus 13 ~~al~~vs~~v~~Gei~gllG~NGaGKTTll~~i~Gl~~p~~G~i~i~G~~~~~~~~~~ig~~pq~~~l~~~ltv~e~l- 91 (210) T cd03269 13 VTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARNRIGYLPEERGLYPKMKVIDQL- 91 (210) T ss_pred EEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCHHHHCCEEEECCCCCCCCCCCHHHHH- T ss_conf 9997542678879959999989998499999999600266899899999868844360199964766679999999999- Q ss_pred HHHHHHHCCCCC-----------CCCHH---HCCCCCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCHH-----HHHHHH Q ss_conf 999963022323-----------47855---50178899899999999999997299547479988989-----999999 Q gi|254781149|r 188 RALSNLLYPSSS-----------RIPYL---NLIRGEINQEQYRISQGICEKLQDFPLIIDDRPSPGIM-----EFVHVA 248 (266) Q Consensus 188 R~ls~~t~~~~s-----------~I~~~---~l~~g~l~~~e~~~i~~a~~~l~~~pl~IdD~~~~ti~-----~ira~a 248 (266) T Consensus 92 ~~~~~l~g~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~kqrv~la~al~~~p~lllLDEPt~gLDp~~~~~i~~~i 171 (210) T cd03269 92 VYLAQLKGLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVI 171 (210) T ss_pred HHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHCCHHHHCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHH T ss_conf 99999749999999999999999869970548805778998999999999995799899992886679999999999999 Q ss_pred HHHH Q ss_conf 9999 Q gi|254781149|r 249 NGLR 252 (266) Q Consensus 249 R~~k 252 (266) T Consensus 172 ~~~~ 175 (210) T cd03269 172 RELA 175 (210) T ss_pred HHHH T ss_conf 9999

HHsearch alignment for GI: 254781149 and conserved domain: cd03269