HHsearch alignment for GI: 254781149 and conserved domain: cd03289
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=92.82 E-value=0.37 Score=28.29 Aligned_cols=115 Identities=13% Similarity=0.164 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCC-------------------------CEEEEC------
Q ss_conf 3777776553016836887068741488999999999630223-------------------------236411------
Q gi|254781149|r 129 LQSVDHLMGGVQLRELILIGARPSMGKTTFALSTALHMAMSGH-------------------------GVAFFS------ 177 (266)
Q Consensus 129 ~~~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a~~g~-------------------------~Vl~fS------ 177 (266)
T Consensus 17 ~~vL~~isf~I~~Ge~vaIvG~sGsGKSTLl~lL~gl~~~~G~I~idg~~i~~~~~~~~r~~i~~vpQ~~~lf~~Ti~eN 96 (275)
T cd03289 17 NAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTEGDIQIDGVSWNSVPLQKWRKAFGVIPQKVFIFSGTFRKN 96 (275)
T ss_pred CCCEECEEEEECCCCEEEEECCCCCCHHHHHHHHHHHCCCCCEEEECCEECCCCCHHHHHHHEEEECCCCCCCCCCHHHH
T ss_conf 66242507998799999999999997999999996035789539999880673689999763899665563267419997
Q ss_pred C----CCCHHHHHHHHHHHHHCCC------CCCCCHHHCCCC-CCCHHHHHHHHHHHHHHHHCCCEEECCCCCCHHHHH
Q ss_conf 6----7534899999999630223------234785550178-899899999999999997299547479988989999
Q gi|254781149|r 178 L----EMDREKLGARALSNLLYPS------SSRIPYLNLIRG-EINQEQYRISQGICEKLQDFPLIIDDRPSPGIMEFV 245 (266)
Q Consensus 178 l----EMs~~ql~~R~ls~~t~~~------~s~I~~~~l~~g-~l~~~e~~~i~~a~~~l~~~pl~IdD~~~~ti~~ir 245 (266)
T Consensus 97 l~~~~~~~~~~i~-~~~~~~-~l~~~i~~lp~~ld~~~~~~g~~LSgGqkQrl~lARaLl~~p~IllLDEpTs~LD~~t 173 (275)
T cd03289 97 LDPYGKWSDEEIW-KVAEEV-GLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPIT 173 (275)
T ss_pred CCCCCCCCHHHHH-HHHHHH-CHHHHHHHCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHH
T ss_conf 0321222889999-999997-6699998573667403268887239999999999999951999899979766899999