HHsearch alignment for GI: 254781149 and conserved domain: cd03291
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=93.12 E-value=0.2 Score=30.20 Aligned_cols=116 Identities=16% Similarity=0.133 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHH-H------CCC------CEEEEC----------CCCCHHH
Q ss_conf 1377777655301683688706874148899999999963-0------223------236411----------6753489
Q gi|254781149|r 128 GLQSVDHLMGGVQLRELILIGARPSMGKTTFALSTALHMA-M------SGH------GVAFFS----------LEMDREK 184 (266)
Q Consensus 128 G~~~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a-~------~g~------~Vl~fS----------lEMs~~q 184 (266)
T Consensus 49 ~~pVLk~Isf~I~~Ge~vaIVG~sGSGKSTLl~lL~gl~~p~~G~I~~~g~i~~v~Q~~~lf~~TireNI~~g~~~~~~~ 128 (282)
T cd03291 49 GAPVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSGRISFSSQFSWIMPGTIKENIIFGVSYDEYR 128 (282)
T ss_pred CCCEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEEEEECCCCCCCCCCHHHHHHCCCCCCHHH
T ss_conf 89614164899849999999999998199999999578727865899999999865744226710999975168868899
Q ss_pred HHHHHHHHHHCC--CCCCCCHHH---C-CCC-CCCHHHHHHHHHHHHHHHHCCCEEECCCCCCHHHHH
Q ss_conf 999999963022--323478555---0-178-899899999999999997299547479988989999
Q gi|254781149|r 185 LGARALSNLLYP--SSSRIPYLN---L-IRG-EINQEQYRISQGICEKLQDFPLIIDDRPSPGIMEFV 245 (266)
Q Consensus 185 l~~R~ls~~t~~--~~s~I~~~~---l-~~g-~l~~~e~~~i~~a~~~l~~~pl~IdD~~~~ti~~ir 245 (266)
T Consensus 129 -~~~~~~~~-~l~~~i~~lp~g~~t~vge~G~~LSGGQkQRlaiARALl~~p~IliLDEpTS~LD~~t 194 (282)
T cd03291 129 -YKSVVKAC-QLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFT 194 (282)
T ss_pred -HHHHHHHH-CCHHHHHHCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHH
T ss_conf -99999985-1499998463425523003677589999999999999842899899868776689878