>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

Probab=90.69 E-value=0.82 Score=25.88 Aligned_cols=110 Identities=18% Similarity=0.129 Sum_probs=62.1 Q ss_pred HCCCCEEEEECCCCHHHHHHHHHHHHHHH-HC------CC----------CEE-EE---CC--CCCHH------------ Q ss_conf 01683688706874148899999999963-02------23----------236-41---16--75348------------ Q gi|254781149|r 139 VQLRELILIGARPSMGKTTFALSTALHMA-MS------GH----------GVA-FF---SL--EMDRE------------ 183 (266) Q Consensus 139 ~~~g~LiviaaRP~mGKTa~alnia~~~a-~~------g~----------~Vl-~f---Sl--EMs~~------------ 183 (266) T Consensus 21 i~~Ge~~~ilGpSGsGKSTLl~li~Gl~~p~sG~I~i~G~di~~~~~~~r~ig~vfQ~~~L~p~ltV~eNi~~~l~~~~~ 100 (211) T cd03298 21 FAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRPVSMLFQENNLFAHLTVEQNVGLGLSPGLK 100 (211) T ss_pred ECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCEECCCCCHHHCCEEEEECCCCCCCCCCHHHHHHHHHHHCCC T ss_conf 88998999999999559999999976999885299999999999998898679995388668999499998758864688 Q ss_pred ---HHHHHHHHHHHCCCCCCCCH-HHCCCCCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCHHH-HHHHHHHH Q ss_conf ---99999999630223234785-5501788998999999999999972995474799889899-99999999 Q gi|254781149|r 184 ---KLGARALSNLLYPSSSRIPY-LNLIRGEINQEQYRISQGICEKLQDFPLIIDDRPSPGIME-FVHVANGL 251 (266) Q Consensus 184 ---ql~~R~ls~~t~~~~s~I~~-~~l~~g~l~~~e~~~i~~a~~~l~~~pl~IdD~~~~ti~~-ira~aR~~ 251 (266) T Consensus 101 ~~~~~~~~v~~~l~~~---gl~~~~~~~p~~LSGGqkQRvaiARAL~~~P~ilLlDEPts~LD~~~~~~l~~~ 170 (211) T cd03298 101 LTAEDRQAIEVALARV---GLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDL 170 (211) T ss_pred CHHHHHHHHHHHHHHC---CCHHHHHCCHHHCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHH T ss_conf 8299999999999876---998787289455898999999999998659999997188765598999999999

HHsearch alignment for GI: 254781149 and conserved domain: cd03298