HHsearch alignment for GI: 254781149 and conserved domain: cd03300
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.74 E-value=0.35 Score=28.42 Aligned_cols=122 Identities=13% Similarity=0.142 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHH-H------CCCC----------E-EEE-C----CC------
Q ss_conf 377777655301683688706874148899999999963-0------2232----------3-641-1----67------
Q gi|254781149|r 129 LQSVDHLMGGVQLRELILIGARPSMGKTTFALSTALHMA-M------SGHG----------V-AFF-S----LE------ 179 (266)
Q Consensus 129 ~~~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a-~------~g~~----------V-l~f-S----lE------ 179 (266)
T Consensus 13 ~~vl~~vsl~v~~Ge~~~iiGpSGsGKSTllr~i~Gl~~p~~G~I~~~g~~v~~~~~~~r~ig~VfQ~~~Lfp~ltV~~N 92 (232)
T cd03300 13 FVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPHKRPVNTVFQNYALFPHLTVFEN 92 (232)
T ss_pred EEEECCCEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCEECCCCCHHHCCEEEEECCCCCCCCCCHHHH
T ss_conf 88987617488799899999999983999999997799998539999999999999545775699148854778919999
Q ss_pred ---------CCHHHHHHHHHHHHHCCCCCCCCHHHCC---CCCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCHH-----
Q ss_conf ---------5348999999996302232347855501---78899899999999999997299547479988989-----
Q gi|254781149|r 180 ---------MDREKLGARALSNLLYPSSSRIPYLNLI---RGEINQEQYRISQGICEKLQDFPLIIDDRPSPGIM----- 242 (266)
Q Consensus 180 ---------Ms~~ql~~R~ls~~t~~~~s~I~~~~l~---~g~l~~~e~~~i~~a~~~l~~~pl~IdD~~~~ti~----- 242 (266)
T Consensus 93 va~~l~~~~~~~~e~~~rv~e~l~~-----v~l~~~~~~~p~~LSGGqkQRVaiARAl~~~P~llllDEP~s~LD~~~~~ 167 (232)
T cd03300 93 IAFGLRLKKLPKAEIKERVAEALDL-----VQLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRK 167 (232)
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHH-----CCCHHHHCCCHHHCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHH
T ss_conf 8779987699999999999999875-----89778761996669989999999999986599999980887646999999
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 9999999999994
Q gi|254781149|r 243 EFVHVANGLRNKH 255 (266)
Q Consensus 243 ~ira~aR~~k~k~ 255 (266)
T Consensus 168 ~i~~~l~~l~~~~ 180 (232)
T cd03300 168 DMQLELKRLQKEL 180 (232)
T ss_pred HHHHHHHHHHHHH
T ss_conf 9999999999985