HHsearch alignment for GI: 254781149 and conserved domain: cd03300

>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.74  E-value=0.35  Score=28.42  Aligned_cols=122  Identities=13%  Similarity=0.142  Sum_probs=72.8

Q ss_pred             HHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHH-H------CCCC----------E-EEE-C----CC------
Q ss_conf             377777655301683688706874148899999999963-0------2232----------3-641-1----67------
Q gi|254781149|r  129 LQSVDHLMGGVQLRELILIGARPSMGKTTFALSTALHMA-M------SGHG----------V-AFF-S----LE------  179 (266)
Q Consensus       129 ~~~LD~~~gG~~~g~LiviaaRP~mGKTa~alnia~~~a-~------~g~~----------V-l~f-S----lE------  179 (266)
T Consensus        13 ~~vl~~vsl~v~~Ge~~~iiGpSGsGKSTllr~i~Gl~~p~~G~I~~~g~~v~~~~~~~r~ig~VfQ~~~Lfp~ltV~~N   92 (232)
T cd03300          13 FVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPHKRPVNTVFQNYALFPHLTVFEN   92 (232)
T ss_pred             EEEECCCEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCEECCCCCHHHCCEEEEECCCCCCCCCCHHHH
T ss_conf             88987617488799899999999983999999997799998539999999999999545775699148854778919999


Q ss_pred             ---------CCHHHHHHHHHHHHHCCCCCCCCHHHCC---CCCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCHH-----
Q ss_conf             ---------5348999999996302232347855501---78899899999999999997299547479988989-----
Q gi|254781149|r  180 ---------MDREKLGARALSNLLYPSSSRIPYLNLI---RGEINQEQYRISQGICEKLQDFPLIIDDRPSPGIM-----  242 (266)
Q Consensus       180 ---------Ms~~ql~~R~ls~~t~~~~s~I~~~~l~---~g~l~~~e~~~i~~a~~~l~~~pl~IdD~~~~ti~-----  242 (266)
T Consensus        93 va~~l~~~~~~~~e~~~rv~e~l~~-----v~l~~~~~~~p~~LSGGqkQRVaiARAl~~~P~llllDEP~s~LD~~~~~  167 (232)
T cd03300          93 IAFGLRLKKLPKAEIKERVAEALDL-----VQLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRK  167 (232)
T ss_pred             HHHHHHHCCCCHHHHHHHHHHHHHH-----CCCHHHHCCCHHHCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHH
T ss_conf             8779987699999999999999875-----89778761996669989999999999986599999980887646999999


Q ss_pred             HHHHHHHHHHHHH
Q ss_conf             9999999999994
Q gi|254781149|r  243 EFVHVANGLRNKH  255 (266)
Q Consensus       243 ~ira~aR~~k~k~  255 (266)
T Consensus       168 ~i~~~l~~l~~~~  180 (232)
T cd03300         168 DMQLELKRLQKEL  180 (232)
T ss_pred             HHHHHHHHHHHHH
T ss_conf             9999999999985