HHsearch alignment for GI: 254781149 and conserved domain: pfam00448

>pfam00448 SRP54 SRP54-type protein, GTPase domain. This family includes relatives of the G-domain of the SRP54 family of proteins.

Probab=96.44  E-value=0.038  Score=35.15  Aligned_cols=89  Identities=18%  Similarity=0.198  Sum_probs=55.6

Q ss_pred             EEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHH--HHHHHHHCCCCCCCCHHHCCCCCCCHHHH-HHHH
Q ss_conf             68870687414889999999996302232364116753489999--99996302232347855501788998999-9999
Q gi|254781149|r  144 LILIGARPSMGKTTFALSTALHMAMSGHGVAFFSLEMDREKLGA--RALSNLLYPSSSRIPYLNLIRGEINQEQY-RISQ  220 (266)
Q Consensus       144 LiviaaRP~mGKTa~alnia~~~a~~g~~Vl~fSlEMs~~ql~~--R~ls~~t~~~~s~I~~~~l~~g~l~~~e~-~~i~  220 (266)
T Consensus         3 vi~lvGptGvGKTTTiaKLAa~~~~~~~~V~lit~Dt~R~gA~eQL~~ya~~-----l~v~~~~~~~~----~d~~~~~~   73 (196)
T pfam00448         3 VILLVGLQGSGKTTTIAKLAAYLKKQGKKVLLVAADTFRAAAIEQLKQLAER-----LGVPVFGSGTG----SDPAAVAF   73 (196)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHH-----CCCEEEECCCC----CCHHHHHH
T ss_conf             9999899999889999999999997799289997587768899999999986-----39817814877----78789999


Q ss_pred             HHHHHH--HHCCCEEECCCCCCH
Q ss_conf             999999--729954747998898
Q gi|254781149|r  221 GICEKL--QDFPLIIDDRPSPGI  241 (266)
Q Consensus       221 ~a~~~l--~~~pl~IdD~~~~ti  241 (266)
T Consensus        74 ~~l~~~~~~~~D~IlIDTaGr~~   96 (196)
T pfam00448        74 DAVEKAKAENYDVVLVDTAGRLQ   96 (196)
T ss_pred             HHHHHHHHCCCCEEEEECCCCCC
T ss_conf             99999884689999998999874