BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254781149|ref|YP_003065562.1| replicative DNA helicase
[Candidatus Liberibacter asiaticus str. psy62]
(266 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254781149|ref|YP_003065562.1| replicative DNA helicase [Candidatus Liberibacter asiaticus str.
psy62]
Length = 266
Score = 553 bits (1424), Expect = e-159, Method: Compositional matrix adjust.
Identities = 266/266 (100%), Positives = 266/266 (100%)
Query: 1 MNAEIISHFESQTKISFSTYLNNLLTLASSISSEVINAARRVVQQWARITISQEAKALAL 60
MNAEIISHFESQTKISFSTYLNNLLTLASSISSEVINAARRVVQQWARITISQEAKALAL
Sbjct: 1 MNAEIISHFESQTKISFSTYLNNLLTLASSISSEVINAARRVVQQWARITISQEAKALAL 60
Query: 61 HTSDPTCNTATLIRKSMQSFEDIISEVHLTKNQCTGSSCISIANAATTAMKSAEQQKKEG 120
HTSDPTCNTATLIRKSMQSFEDIISEVHLTKNQCTGSSCISIANAATTAMKSAEQQKKEG
Sbjct: 61 HTSDPTCNTATLIRKSMQSFEDIISEVHLTKNQCTGSSCISIANAATTAMKSAEQQKKEG 120
Query: 121 ENPDIKWGLQSVDHLMGGVQLRELILIGARPSMGKTTFALSTALHMAMSGHGVAFFSLEM 180
ENPDIKWGLQSVDHLMGGVQLRELILIGARPSMGKTTFALSTALHMAMSGHGVAFFSLEM
Sbjct: 121 ENPDIKWGLQSVDHLMGGVQLRELILIGARPSMGKTTFALSTALHMAMSGHGVAFFSLEM 180
Query: 181 DREKLGARALSNLLYPSSSRIPYLNLIRGEINQEQYRISQGICEKLQDFPLIIDDRPSPG 240
DREKLGARALSNLLYPSSSRIPYLNLIRGEINQEQYRISQGICEKLQDFPLIIDDRPSPG
Sbjct: 181 DREKLGARALSNLLYPSSSRIPYLNLIRGEINQEQYRISQGICEKLQDFPLIIDDRPSPG 240
Query: 241 IMEFVHVANGLRNKHTKMVQLYRLLS 266
IMEFVHVANGLRNKHTKMVQLYRLLS
Sbjct: 241 IMEFVHVANGLRNKHTKMVQLYRLLS 266
>gi|254780332|ref|YP_003064745.1| replicative DNA helicase [Candidatus Liberibacter asiaticus str.
psy62]
Length = 504
Score = 75.9 bits (185), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 49/163 (30%), Positives = 79/163 (48%), Gaps = 21/163 (12%)
Query: 88 HLTKNQCTGSSCISIANAATTAMKSAEQQ-KKEGENPDIKWGLQSVDHLMGGVQLRELIL 146
HL +N + ++A T A+ A Q ++G + G+Q++D MGG+Q +LI+
Sbjct: 164 HLAENGRYDGGFHTFSDAMTVAIDMAGQAFNRDGRLAGVSTGIQTLDKQMGGLQRSDLII 223
Query: 147 IGARPSMGKTTFALSTALHMA---------------MSGHGVAFFSLEMDREKLGARALS 191
I RP MGKT+ A + A ++A ++G V F+SLEM E+L R +S
Sbjct: 224 IAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSSEQLATRIIS 283
Query: 192 NLLYPSSSRIPYLNLIRGEINQEQYRISQGICEKLQDFPLIID 234
+ +P + RGE+ + Y + +Q PL ID
Sbjct: 284 E-----QTEVPSSKIRRGELTRPDYEKIVACSQVMQKLPLYID 321
>gi|254780334|ref|YP_003064747.1| DNA repair protein RadA [Candidatus Liberibacter asiaticus str.
psy62]
Length = 479
Score = 35.4 bits (80), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 129 LQSVDHLMGGVQLR-ELILIGARPSMGKTTFALSTALHMAMSGHGVAFFSLE 179
+ +D + GG +R +IL+G P +GK+T + TA +A H + + S E
Sbjct: 76 IDELDRVTGGGFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGE 127
>gi|255764460|ref|YP_003064605.2| recombinase A [Candidatus Liberibacter asiaticus str. psy62]
Length = 363
Score = 24.6 bits (52), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 24/56 (42%)
Query: 136 MGGVQLRELILIGARPSMGKTTFALSTALHMAMSGHGVAFFSLEMDREKLGARALS 191
+GG ++ I S GKTT AL T +G AF E + + AR L
Sbjct: 61 IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLG 116
>gi|254780274|ref|YP_003064687.1| lysophospholipase protein [Candidatus Liberibacter asiaticus str.
psy62]
Length = 317
Score = 24.3 bits (51), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Query: 144 LILIGARPSMGKTTFALSTALHMAMSGHGVAFFSLEMDREKLGARALSNLL 194
++L G S+G T ALST L G+A ++L++ EK ++ LL
Sbjct: 106 VLLFGY--SLG-TIIALSTLLKYPQKFSGIALWNLDLCFEKYSCMLMTLLL 153
>gi|254780327|ref|YP_003064740.1| preprotein translocase subunit SecA [Candidatus Liberibacter
asiaticus str. psy62]
Length = 890
Score = 22.7 bits (47), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 128 GLQSVD-HLMGGVQLRELILIGARPSMGKTTFALSTALHMAMSGHGV 173
G++ D L+GG+ L + + + GKT A+ A+SG GV
Sbjct: 83 GMRPFDVQLLGGMILHKGCVAEMKTGEGKTLAAVLPVYLNALSGKGV 129
>gi|254780620|ref|YP_003065033.1| iron-responsive transcriptional regulator [Candidatus Liberibacter
asiaticus str. psy62]
Length = 144
Score = 22.7 bits (47), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 9/36 (25%), Positives = 21/36 (58%), Gaps = 4/36 (11%)
Query: 55 AKALALHTSDP----TCNTATLIRKSMQSFEDIISE 86
A+ A H D +C +++RK++ +F D++++
Sbjct: 89 AECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQ 124
>gi|254780613|ref|YP_003065026.1| adenylosuccinate synthetase [Candidatus Liberibacter asiaticus str.
psy62]
Length = 432
Score = 22.3 bits (46), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 14/59 (23%), Positives = 27/59 (45%)
Query: 181 DREKLGARALSNLLYPSSSRIPYLNLIRGEINQEQYRISQGICEKLQDFPLIIDDRPSP 239
++E L L L+Y +P++++I + +E + + + E Q F L D P
Sbjct: 180 EKEVLYKTILEELMYAREKILPFMDVIWSLLERESRKGAHILFEGAQGFLLDNDHGTYP 238
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.318 0.130 0.364
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 148,413
Number of Sequences: 1233
Number of extensions: 5294
Number of successful extensions: 26
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 15
Number of HSP's gapped (non-prelim): 10
length of query: 266
length of database: 328,796
effective HSP length: 72
effective length of query: 194
effective length of database: 240,020
effective search space: 46563880
effective search space used: 46563880
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 37 (18.9 bits)