Query         gi|254781150|ref|YP_003065563.1| hypothetical protein CLIBASIA_05285 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 33
No_of_seqs    1 out of 3
Neff          1.0 
Searched_HMMs 13730
Date          Wed Jun  1 11:30:22 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254781150.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 d1e3ha6 d.101.1.1 (A:483-578)   13.1      55   0.004   14.6   2.3   27    1-28     37-66  (96)
  2 d2i5ia1 c.6.2.8 (A:2-262) Unch  12.6      30  0.0022   15.9   0.8   20    7-26     25-44  (261)
  3 d1k75a_ c.82.1.2 (A:) L-histid   6.8      84  0.0062   13.6   1.3   24    4-27    112-140 (431)
  4 d1m5wa_ c.1.24.1 (A:) Pyridoxi   4.7   1E+02  0.0074   13.2   0.6   17   15-31    128-144 (242)
  5 d2p3pa1 d.383.1.1 (A:66-262) H   4.1      42  0.0031   15.1  -1.7   11   17-27      6-16  (197)
  6 d1cvra1 b.1.18.12 (A:351-432)    3.9 1.4E+02    0.01   12.6   0.8   30    2-31     18-48  (82)
  7 d2i9xa1 d.366.1.1 (A:1-84) Put   3.8 1.2E+02  0.0085   12.9   0.4   14   17-30     42-55  (84)
  8 d2ia9a1 d.366.1.1 (A:1-92) Put   3.5 1.3E+02  0.0095   12.7   0.4   14   17-30     42-55  (92)
  9 d1qo8a1 a.138.1.3 (A:2-102) Fl   3.2 1.4E+02    0.01   12.5   0.3   15   19-33     86-100 (101)
 10 d1zo0a1 d.108.1.7 (A:94-219) O   3.0 1.6E+02   0.011   12.3   0.4   14   17-30     45-58  (126)

No 1  
>d1e3ha6 d.101.1.1 (A:483-578) Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domains 2 and 5 {Streptomyces antibioticus [TaxId: 1890]}
Probab=13.14  E-value=55  Score=14.59  Aligned_cols=27  Identities=33%  Similarity=0.482  Sum_probs=18.2

Q ss_pred             CCEEEEECCCCCCEEEEEEEE---CCHHHHH
Q ss_conf             944765123788001554431---5657750
Q gi|254781150|r    1 MDFIVAKQRNGPIESVSLFVD---MPYSVIK   28 (33)
Q Consensus         1 mdfivakqrngpiesvslfvd---mpysvik   28 (33)
                      |||-||-.|+| |....+=+.   .|+.+++
T Consensus        37 MDFKVAGT~~G-ITa~QmDiKi~Gi~~~il~   66 (96)
T d1e3ha6          37 MDFKVAGTKEF-VTALQLDTKLDGIPASVLA   66 (96)
T ss_dssp             EEEEEEECSSC-EEEEEEEECCSCCCHHHHH
T ss_pred             CCCCCCCCCCC-CEEEEEEECCCCCCHHHHH
T ss_conf             56553357556-1332443000577799999


No 2  
>d2i5ia1 c.6.2.8 (A:2-262) Uncharacterized protein EF3048 {Enterococcus faecalis [TaxId: 1351]}
Probab=12.62  E-value=30  Score=15.89  Aligned_cols=20  Identities=20%  Similarity=0.456  Sum_probs=16.3

Q ss_pred             ECCCCCCEEEEEEEECCHHH
Q ss_conf             12378800155443156577
Q gi|254781150|r    7 KQRNGPIESVSLFVDMPYSV   26 (33)
Q Consensus         7 kqrngpiesvslfvdmpysv   26 (33)
                      --++|.+.|+|+.|.||+..
T Consensus        25 ~~~~G~its~s~mvn~p~~~   44 (261)
T d2i5ia1          25 AHKRGVVTSTTALPTSPYFL   44 (261)
T ss_dssp             HHHSSSCCEEEECTTSTTHH
T ss_pred             HHHCCCCEEEEECCCCCHHH
T ss_conf             99879861678643890699


No 3  
>d1k75a_ c.82.1.2 (A:) L-histidinol dehydrogenase HisD {Escherichia coli [TaxId: 562]}
Probab=6.80  E-value=84  Score=13.63  Aligned_cols=24  Identities=25%  Similarity=0.505  Sum_probs=17.3

Q ss_pred             EEEECCCCCCEEEEEEEE-----CCHHHH
Q ss_conf             765123788001554431-----565775
Q gi|254781150|r    4 IVAKQRNGPIESVSLFVD-----MPYSVI   27 (33)
Q Consensus         4 ivakqrngpiesvslfvd-----mpysvi   27 (33)
                      +...|+.-||++|.++|-     .|-||+
T Consensus       112 v~~g~~~~PI~~VGlYVPGG~A~ypSsvL  140 (431)
T d1k75a_         112 VRCQQVTRPVASVGLYIPGGSAPLFSTVL  140 (431)
T ss_dssp             EEEEEEEEECSEEEEECCCSSSCCHHHHH
T ss_pred             CEEEEEEEEHHHHEEECCCCCCCCHHHHH
T ss_conf             30244444410100331578765368899


No 4  
>d1m5wa_ c.1.24.1 (A:) Pyridoxine 5'-phosphate synthase {Escherichia coli [TaxId: 562]}
Probab=4.69  E-value=1e+02  Score=13.23  Aligned_cols=17  Identities=41%  Similarity=0.515  Sum_probs=11.8

Q ss_pred             EEEEEEECCHHHHHCCC
Q ss_conf             15544315657750455
Q gi|254781150|r   15 SVSLFVDMPYSVIKDGK   31 (33)
Q Consensus        15 svslfvdmpysvikdgk   31 (33)
                      .||||+|--.+-|+.-+
T Consensus       128 rvSLFiDpd~~~i~~a~  144 (242)
T d1m5wa_         128 QVSLFIDADEEQIKAAA  144 (242)
T ss_dssp             EEEEEECSCHHHHHHHH
T ss_pred             EEEEEECCCHHHHHHHH
T ss_conf             07999445246577886


No 5  
>d2p3pa1 d.383.1.1 (A:66-262) Hypothetical protein PG1388 {Porphyromonas gingivalis [TaxId: 837]}
Probab=4.09  E-value=42  Score=15.14  Aligned_cols=11  Identities=45%  Similarity=0.739  Sum_probs=5.0

Q ss_pred             EEEEECCHHHH
Q ss_conf             54431565775
Q gi|254781150|r   17 SLFVDMPYSVI   27 (33)
Q Consensus        17 slfvdmpysvi   27 (33)
                      ++||.||-|++
T Consensus         6 ~lFvaMPDS~~   16 (197)
T d2p3pa1           6 RCFLAMPESVL   16 (197)
T ss_dssp             HHHHHCCTTTC
T ss_pred             HHHHHCCCCCC
T ss_conf             78762873214


No 6  
>d1cvra1 b.1.18.12 (A:351-432) Gingipain R (RgpB), C-terminal domain {Porphyromonas gingivalis [TaxId: 837]}
Probab=3.92  E-value=1.4e+02  Score=12.56  Aligned_cols=30  Identities=43%  Similarity=0.483  Sum_probs=22.5

Q ss_pred             CEEEEECCCCCCEEEEEEEECCHH-HHHCCC
Q ss_conf             447651237880015544315657-750455
Q gi|254781150|r    2 DFIVAKQRNGPIESVSLFVDMPYS-VIKDGK   31 (33)
Q Consensus         2 dfivakqrngpiesvslfvdmpys-vikdgk   31 (33)
                      .|-|+-.-||.|...|---||--| +.+||+
T Consensus        18 s~~v~cdyngaiat~s~~g~m~gsaiv~~g~   48 (82)
T d1cvra1          18 TFEVACDYNGAIATLSDDGDMVGTAIVKDGK   48 (82)
T ss_dssp             EEEEEESSTTCEEEEEETTEEEEEEECBTTE
T ss_pred             EEEEEECCCCEEEEEECCCCEEEEEEEECCE
T ss_conf             5999821686088980388377678984774


No 7  
>d2i9xa1 d.366.1.1 (A:1-84) Putative septation protein SpoVG {Staphylococcus epidermidis [TaxId: 1282]}
Probab=3.80  E-value=1.2e+02  Score=12.91  Aligned_cols=14  Identities=50%  Similarity=0.778  Sum_probs=9.7

Q ss_pred             EEEEECCHHHHHCC
Q ss_conf             54431565775045
Q gi|254781150|r   17 SLFVDMPYSVIKDG   30 (33)
Q Consensus        17 slfvdmpysvikdg   30 (33)
                      .|||.||----+||
T Consensus        42 GlFVamPs~k~~~g   55 (84)
T d2i9xa1          42 GLFVAMPSKRTPDG   55 (84)
T ss_dssp             EEEEECCEEECTTS
T ss_pred             CCEEECCCCCCCCC
T ss_conf             76998977499999


No 8  
>d2ia9a1 d.366.1.1 (A:1-92) Putative septation protein SpoVG {Bacillus subtilis [TaxId: 1423]}
Probab=3.48  E-value=1.3e+02  Score=12.68  Aligned_cols=14  Identities=50%  Similarity=0.778  Sum_probs=9.4

Q ss_pred             EEEEECCHHHHHCC
Q ss_conf             54431565775045
Q gi|254781150|r   17 SLFVDMPYSVIKDG   30 (33)
Q Consensus        17 slfvdmpysvikdg   30 (33)
                      .|||.||----+||
T Consensus        42 GlFVaMPs~k~~~g   55 (92)
T d2ia9a1          42 GLFVAMPSKRTPDG   55 (92)
T ss_dssp             EEEEECCEEECTTS
T ss_pred             CCEEECCCCCCCCC
T ss_conf             75998977599999


No 9  
>d1qo8a1 a.138.1.3 (A:2-102) Flavocytochrome c3 (respiratory fumarate reductase), N-terminal domain {Shewanella frigidimarina [TaxId: 56812]}
Probab=3.20  E-value=1.4e+02  Score=12.51  Aligned_cols=15  Identities=40%  Similarity=0.762  Sum_probs=0.0

Q ss_pred             EEECCHHHHHCCCCC
Q ss_conf             431565775045579
Q gi|254781150|r   19 FVDMPYSVIKDGKEW   33 (33)
Q Consensus        19 fvdmpysvikdgkew   33 (33)
                      |..|||.--+..|.|
T Consensus        86 ~~~~p~~~~~~~~~~  100 (101)
T d1qo8a1          86 IKPMPFSDAKKKKSW  100 (101)
T ss_dssp             CCCCTTTTSCCCCCS
T ss_pred             CCCCCCCHHHHHHCC
T ss_conf             778872105566323


No 10 
>d1zo0a1 d.108.1.7 (A:94-219) Ornithine decarboxylase antizyme {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=3.05  E-value=1.6e+02  Score=12.26  Aligned_cols=14  Identities=21%  Similarity=0.800  Sum_probs=0.0

Q ss_pred             EEEEECCHHHHHCC
Q ss_conf             54431565775045
Q gi|254781150|r   17 SLFVDMPYSVIKDG   30 (33)
Q Consensus        17 slfvdmpysvikdg   30 (33)
                      +|||.+|....-.|
T Consensus        45 ~Lyv~iP~~~l~~g   58 (126)
T d1zo0a1          45 GLYIELPAGPLPEG   58 (126)
T ss_dssp             EEEEECSSCCCSSC
T ss_pred             EEEEECCCCCCCCC
T ss_conf             78987888758441


Done!