Query gi|254781150|ref|YP_003065563.1| hypothetical protein CLIBASIA_05285 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 33 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 13730 Date Wed Jun 1 11:30:22 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254781150.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d1e3ha6 d.101.1.1 (A:483-578) 13.1 55 0.004 14.6 2.3 27 1-28 37-66 (96) 2 d2i5ia1 c.6.2.8 (A:2-262) Unch 12.6 30 0.0022 15.9 0.8 20 7-26 25-44 (261) 3 d1k75a_ c.82.1.2 (A:) L-histid 6.8 84 0.0062 13.6 1.3 24 4-27 112-140 (431) 4 d1m5wa_ c.1.24.1 (A:) Pyridoxi 4.7 1E+02 0.0074 13.2 0.6 17 15-31 128-144 (242) 5 d2p3pa1 d.383.1.1 (A:66-262) H 4.1 42 0.0031 15.1 -1.7 11 17-27 6-16 (197) 6 d1cvra1 b.1.18.12 (A:351-432) 3.9 1.4E+02 0.01 12.6 0.8 30 2-31 18-48 (82) 7 d2i9xa1 d.366.1.1 (A:1-84) Put 3.8 1.2E+02 0.0085 12.9 0.4 14 17-30 42-55 (84) 8 d2ia9a1 d.366.1.1 (A:1-92) Put 3.5 1.3E+02 0.0095 12.7 0.4 14 17-30 42-55 (92) 9 d1qo8a1 a.138.1.3 (A:2-102) Fl 3.2 1.4E+02 0.01 12.5 0.3 15 19-33 86-100 (101) 10 d1zo0a1 d.108.1.7 (A:94-219) O 3.0 1.6E+02 0.011 12.3 0.4 14 17-30 45-58 (126) No 1 >d1e3ha6 d.101.1.1 (A:483-578) Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domains 2 and 5 {Streptomyces antibioticus [TaxId: 1890]} Probab=13.14 E-value=55 Score=14.59 Aligned_cols=27 Identities=33% Similarity=0.482 Sum_probs=18.2 Q ss_pred CCEEEEECCCCCCEEEEEEEE---CCHHHHH Q ss_conf 944765123788001554431---5657750 Q gi|254781150|r 1 MDFIVAKQRNGPIESVSLFVD---MPYSVIK 28 (33) Q Consensus 1 mdfivakqrngpiesvslfvd---mpysvik 28 (33) |||-||-.|+| |....+=+. .|+.+++ T Consensus 37 MDFKVAGT~~G-ITa~QmDiKi~Gi~~~il~ 66 (96) T d1e3ha6 37 MDFKVAGTKEF-VTALQLDTKLDGIPASVLA 66 (96) T ss_dssp EEEEEEECSSC-EEEEEEEECCSCCCHHHHH T ss_pred CCCCCCCCCCC-CEEEEEEECCCCCCHHHHH T ss_conf 56553357556-1332443000577799999 No 2 >d2i5ia1 c.6.2.8 (A:2-262) Uncharacterized protein EF3048 {Enterococcus faecalis [TaxId: 1351]} Probab=12.62 E-value=30 Score=15.89 Aligned_cols=20 Identities=20% Similarity=0.456 Sum_probs=16.3 Q ss_pred ECCCCCCEEEEEEEECCHHH Q ss_conf 12378800155443156577 Q gi|254781150|r 7 KQRNGPIESVSLFVDMPYSV 26 (33) Q Consensus 7 kqrngpiesvslfvdmpysv 26 (33) --++|.+.|+|+.|.||+.. T Consensus 25 ~~~~G~its~s~mvn~p~~~ 44 (261) T d2i5ia1 25 AHKRGVVTSTTALPTSPYFL 44 (261) T ss_dssp HHHSSSCCEEEECTTSTTHH T ss_pred HHHCCCCEEEEECCCCCHHH T ss_conf 99879861678643890699 No 3 >d1k75a_ c.82.1.2 (A:) L-histidinol dehydrogenase HisD {Escherichia coli [TaxId: 562]} Probab=6.80 E-value=84 Score=13.63 Aligned_cols=24 Identities=25% Similarity=0.505 Sum_probs=17.3 Q ss_pred EEEECCCCCCEEEEEEEE-----CCHHHH Q ss_conf 765123788001554431-----565775 Q gi|254781150|r 4 IVAKQRNGPIESVSLFVD-----MPYSVI 27 (33) Q Consensus 4 ivakqrngpiesvslfvd-----mpysvi 27 (33) +...|+.-||++|.++|- .|-||+ T Consensus 112 v~~g~~~~PI~~VGlYVPGG~A~ypSsvL 140 (431) T d1k75a_ 112 VRCQQVTRPVASVGLYIPGGSAPLFSTVL 140 (431) T ss_dssp EEEEEEEEECSEEEEECCCSSSCCHHHHH T ss_pred CEEEEEEEEHHHHEEECCCCCCCCHHHHH T ss_conf 30244444410100331578765368899 No 4 >d1m5wa_ c.1.24.1 (A:) Pyridoxine 5'-phosphate synthase {Escherichia coli [TaxId: 562]} Probab=4.69 E-value=1e+02 Score=13.23 Aligned_cols=17 Identities=41% Similarity=0.515 Sum_probs=11.8 Q ss_pred EEEEEEECCHHHHHCCC Q ss_conf 15544315657750455 Q gi|254781150|r 15 SVSLFVDMPYSVIKDGK 31 (33) Q Consensus 15 svslfvdmpysvikdgk 31 (33) .||||+|--.+-|+.-+ T Consensus 128 rvSLFiDpd~~~i~~a~ 144 (242) T d1m5wa_ 128 QVSLFIDADEEQIKAAA 144 (242) T ss_dssp EEEEEECSCHHHHHHHH T ss_pred EEEEEECCCHHHHHHHH T ss_conf 07999445246577886 No 5 >d2p3pa1 d.383.1.1 (A:66-262) Hypothetical protein PG1388 {Porphyromonas gingivalis [TaxId: 837]} Probab=4.09 E-value=42 Score=15.14 Aligned_cols=11 Identities=45% Similarity=0.739 Sum_probs=5.0 Q ss_pred EEEEECCHHHH Q ss_conf 54431565775 Q gi|254781150|r 17 SLFVDMPYSVI 27 (33) Q Consensus 17 slfvdmpysvi 27 (33) ++||.||-|++ T Consensus 6 ~lFvaMPDS~~ 16 (197) T d2p3pa1 6 RCFLAMPESVL 16 (197) T ss_dssp HHHHHCCTTTC T ss_pred HHHHHCCCCCC T ss_conf 78762873214 No 6 >d1cvra1 b.1.18.12 (A:351-432) Gingipain R (RgpB), C-terminal domain {Porphyromonas gingivalis [TaxId: 837]} Probab=3.92 E-value=1.4e+02 Score=12.56 Aligned_cols=30 Identities=43% Similarity=0.483 Sum_probs=22.5 Q ss_pred CEEEEECCCCCCEEEEEEEECCHH-HHHCCC Q ss_conf 447651237880015544315657-750455 Q gi|254781150|r 2 DFIVAKQRNGPIESVSLFVDMPYS-VIKDGK 31 (33) Q Consensus 2 dfivakqrngpiesvslfvdmpys-vikdgk 31 (33) .|-|+-.-||.|...|---||--| +.+||+ T Consensus 18 s~~v~cdyngaiat~s~~g~m~gsaiv~~g~ 48 (82) T d1cvra1 18 TFEVACDYNGAIATLSDDGDMVGTAIVKDGK 48 (82) T ss_dssp EEEEEESSTTCEEEEEETTEEEEEEECBTTE T ss_pred EEEEEECCCCEEEEEECCCCEEEEEEEECCE T ss_conf 5999821686088980388377678984774 No 7 >d2i9xa1 d.366.1.1 (A:1-84) Putative septation protein SpoVG {Staphylococcus epidermidis [TaxId: 1282]} Probab=3.80 E-value=1.2e+02 Score=12.91 Aligned_cols=14 Identities=50% Similarity=0.778 Sum_probs=9.7 Q ss_pred EEEEECCHHHHHCC Q ss_conf 54431565775045 Q gi|254781150|r 17 SLFVDMPYSVIKDG 30 (33) Q Consensus 17 slfvdmpysvikdg 30 (33) .|||.||----+|| T Consensus 42 GlFVamPs~k~~~g 55 (84) T d2i9xa1 42 GLFVAMPSKRTPDG 55 (84) T ss_dssp EEEEECCEEECTTS T ss_pred CCEEECCCCCCCCC T ss_conf 76998977499999 No 8 >d2ia9a1 d.366.1.1 (A:1-92) Putative septation protein SpoVG {Bacillus subtilis [TaxId: 1423]} Probab=3.48 E-value=1.3e+02 Score=12.68 Aligned_cols=14 Identities=50% Similarity=0.778 Sum_probs=9.4 Q ss_pred EEEEECCHHHHHCC Q ss_conf 54431565775045 Q gi|254781150|r 17 SLFVDMPYSVIKDG 30 (33) Q Consensus 17 slfvdmpysvikdg 30 (33) .|||.||----+|| T Consensus 42 GlFVaMPs~k~~~g 55 (92) T d2ia9a1 42 GLFVAMPSKRTPDG 55 (92) T ss_dssp EEEEECCEEECTTS T ss_pred CCEEECCCCCCCCC T ss_conf 75998977599999 No 9 >d1qo8a1 a.138.1.3 (A:2-102) Flavocytochrome c3 (respiratory fumarate reductase), N-terminal domain {Shewanella frigidimarina [TaxId: 56812]} Probab=3.20 E-value=1.4e+02 Score=12.51 Aligned_cols=15 Identities=40% Similarity=0.762 Sum_probs=0.0 Q ss_pred EEECCHHHHHCCCCC Q ss_conf 431565775045579 Q gi|254781150|r 19 FVDMPYSVIKDGKEW 33 (33) Q Consensus 19 fvdmpysvikdgkew 33 (33) |..|||.--+..|.| T Consensus 86 ~~~~p~~~~~~~~~~ 100 (101) T d1qo8a1 86 IKPMPFSDAKKKKSW 100 (101) T ss_dssp CCCCTTTTSCCCCCS T ss_pred CCCCCCCHHHHHHCC T ss_conf 778872105566323 No 10 >d1zo0a1 d.108.1.7 (A:94-219) Ornithine decarboxylase antizyme {Rat (Rattus norvegicus) [TaxId: 10116]} Probab=3.05 E-value=1.6e+02 Score=12.26 Aligned_cols=14 Identities=21% Similarity=0.800 Sum_probs=0.0 Q ss_pred EEEEECCHHHHHCC Q ss_conf 54431565775045 Q gi|254781150|r 17 SLFVDMPYSVIKDG 30 (33) Q Consensus 17 slfvdmpysvikdg 30 (33) +|||.+|....-.| T Consensus 45 ~Lyv~iP~~~l~~g 58 (126) T d1zo0a1 45 GLYIELPAGPLPEG 58 (126) T ss_dssp EEEEECSSCCCSSC T ss_pred EEEEECCCCCCCCC T ss_conf 78987888758441 Done!