BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= gi|254781150|ref|YP_003065563.1| hypothetical protein CLIBASIA_05285 [Candidatus Liberibacter asiaticus str. psy62] (33 letters) Database: nr 14,124,377 sequences; 4,842,793,630 total letters Searching..................................................done Results from round 1 >gi|254781150|ref|YP_003065563.1| hypothetical protein CLIBASIA_05285 [Candidatus Liberibacter asiaticus str. psy62] gi|254040827|gb|ACT57623.1| hypothetical protein CLIBASIA_05285 [Candidatus Liberibacter asiaticus str. psy62] Length = 33 Score = 70.5 bits (171), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 33/33 (100%), Positives = 33/33 (100%) Query: 1 MDFIVAKQRNGPIESVSLFVDMPYSVIKDGKEW 33 MDFIVAKQRNGPIESVSLFVDMPYSVIKDGKEW Sbjct: 1 MDFIVAKQRNGPIESVSLFVDMPYSVIKDGKEW 33 >gi|315122540|ref|YP_004063029.1| replicative DNA helicase [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495942|gb|ADR52541.1| replicative DNA helicase [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 475 Score = 68.6 bits (166), Expect = 2e-10, Method: Composition-based stats. Identities = 29/32 (90%), Positives = 31/32 (96%) Query: 1 MDFIVAKQRNGPIESVSLFVDMPYSVIKDGKE 32 MDFI+AKQRNGPIESVSLF DMPYS+IKDGKE Sbjct: 444 MDFIIAKQRNGPIESVSLFADMPYSIIKDGKE 475 >gi|157803634|ref|YP_001492183.1| replicative DNA helicase [Rickettsia canadensis str. McKiel] gi|157784897|gb|ABV73398.1| replicative DNA helicase [Rickettsia canadensis str. McKiel] Length = 494 Score = 36.2 bits (82), Expect = 1.4, Method: Composition-based stats. Identities = 16/24 (66%), Positives = 18/24 (75%) Query: 2 DFIVAKQRNGPIESVSLFVDMPYS 25 D IVAK RNGPI +VSL+ D YS Sbjct: 458 DIIVAKHRNGPIGNVSLYYDSQYS 481 >gi|225630226|ref|YP_002727017.1| replicative DNA helicase [Wolbachia sp. wRi] gi|225592207|gb|ACN95226.1| replicative DNA helicase [Wolbachia sp. wRi] Length = 483 Score = 35.4 bits (80), Expect = 2.9, Method: Composition-based stats. Identities = 16/31 (51%), Positives = 19/31 (61%) Query: 2 DFIVAKQRNGPIESVSLFVDMPYSVIKDGKE 32 + I+AKQRNGPI SV L+ D KD E Sbjct: 449 ELIIAKQRNGPIGSVKLYFDSNRGAFKDYTE 479 >gi|58584557|ref|YP_198130.1| replicative DNA helicase [Wolbachia endosymbiont strain TRS of Brugia malayi] gi|256051414|ref|XP_002569553.1| Replicative DNA helicase [Schistosoma mansoni] gi|58418873|gb|AAW70888.1| Replicative DNA helicase, DnaB [Wolbachia endosymbiont strain TRS of Brugia malayi] gi|227283564|emb|CAY18524.1| Replicative DNA helicase, putative [Schistosoma mansoni] Length = 483 Score = 35.0 bits (79), Expect = 3.8, Method: Composition-based stats. Identities = 15/28 (53%), Positives = 18/28 (64%) Query: 2 DFIVAKQRNGPIESVSLFVDMPYSVIKD 29 + I+AKQRNGPI SV L+ D KD Sbjct: 449 ELIIAKQRNGPIGSVKLYFDSNQGAFKD 476 >gi|99034809|ref|ZP_01314727.1| hypothetical protein Wendoof_01000447 [Wolbachia endosymbiont of Drosophila willistoni TSC#14030-0811.24] Length = 483 Score = 34.7 bits (78), Expect = 4.4, Method: Composition-based stats. Identities = 15/31 (48%), Positives = 19/31 (61%) Query: 2 DFIVAKQRNGPIESVSLFVDMPYSVIKDGKE 32 + ++AKQRNGPI SV L+ D KD E Sbjct: 449 ELVIAKQRNGPIGSVKLYFDSNRGAFKDYTE 479 >gi|42520234|ref|NP_966149.1| replicative DNA helicase [Wolbachia endosymbiont of Drosophila melanogaster] gi|42409972|gb|AAS14083.1| replicative DNA helicase [Wolbachia endosymbiont of Drosophila melanogaster] Length = 483 Score = 34.7 bits (78), Expect = 4.4, Method: Composition-based stats. Identities = 15/31 (48%), Positives = 19/31 (61%) Query: 2 DFIVAKQRNGPIESVSLFVDMPYSVIKDGKE 32 + ++AKQRNGPI SV L+ D KD E Sbjct: 449 ELVIAKQRNGPIGSVKLYFDSNRGAFKDYTE 479 Searching..................................................done Results from round 2 CONVERGED! >gi|315122540|ref|YP_004063029.1| replicative DNA helicase [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495942|gb|ADR52541.1| replicative DNA helicase [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 475 Score = 71.5 bits (174), Expect = 4e-11, Method: Composition-based stats. Identities = 29/32 (90%), Positives = 31/32 (96%) Query: 1 MDFIVAKQRNGPIESVSLFVDMPYSVIKDGKE 32 MDFI+AKQRNGPIESVSLF DMPYS+IKDGKE Sbjct: 444 MDFIIAKQRNGPIESVSLFADMPYSIIKDGKE 475 >gi|254781150|ref|YP_003065563.1| hypothetical protein CLIBASIA_05285 [Candidatus Liberibacter asiaticus str. psy62] gi|254040827|gb|ACT57623.1| hypothetical protein CLIBASIA_05285 [Candidatus Liberibacter asiaticus str. psy62] Length = 33 Score = 66.5 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 33/33 (100%), Positives = 33/33 (100%) Query: 1 MDFIVAKQRNGPIESVSLFVDMPYSVIKDGKEW 33 MDFIVAKQRNGPIESVSLFVDMPYSVIKDGKEW Sbjct: 1 MDFIVAKQRNGPIESVSLFVDMPYSVIKDGKEW 33 >gi|157803634|ref|YP_001492183.1| replicative DNA helicase [Rickettsia canadensis str. McKiel] gi|157784897|gb|ABV73398.1| replicative DNA helicase [Rickettsia canadensis str. McKiel] Length = 494 Score = 36.5 bits (83), Expect = 1.3, Method: Composition-based stats. Identities = 16/24 (66%), Positives = 18/24 (75%) Query: 2 DFIVAKQRNGPIESVSLFVDMPYS 25 D IVAK RNGPI +VSL+ D YS Sbjct: 458 DIIVAKHRNGPIGNVSLYYDSQYS 481 >gi|225630226|ref|YP_002727017.1| replicative DNA helicase [Wolbachia sp. wRi] gi|225592207|gb|ACN95226.1| replicative DNA helicase [Wolbachia sp. wRi] Length = 483 Score = 35.7 bits (81), Expect = 2.4, Method: Composition-based stats. Identities = 16/31 (51%), Positives = 19/31 (61%) Query: 2 DFIVAKQRNGPIESVSLFVDMPYSVIKDGKE 32 + I+AKQRNGPI SV L+ D KD E Sbjct: 449 ELIIAKQRNGPIGSVKLYFDSNRGAFKDYTE 479 >gi|58584557|ref|YP_198130.1| replicative DNA helicase [Wolbachia endosymbiont strain TRS of Brugia malayi] gi|256051414|ref|XP_002569553.1| Replicative DNA helicase [Schistosoma mansoni] gi|58418873|gb|AAW70888.1| Replicative DNA helicase, DnaB [Wolbachia endosymbiont strain TRS of Brugia malayi] gi|227283564|emb|CAY18524.1| Replicative DNA helicase, putative [Schistosoma mansoni] Length = 483 Score = 35.3 bits (80), Expect = 3.1, Method: Composition-based stats. Identities = 15/28 (53%), Positives = 18/28 (64%) Query: 2 DFIVAKQRNGPIESVSLFVDMPYSVIKD 29 + I+AKQRNGPI SV L+ D KD Sbjct: 449 ELIIAKQRNGPIGSVKLYFDSNQGAFKD 476 >gi|83591750|ref|YP_425502.1| DnaB helicase [Rhodospirillum rubrum ATCC 11170] gi|83574664|gb|ABC21215.1| DnaB helicase [Rhodospirillum rubrum ATCC 11170] Length = 507 Score = 34.9 bits (79), Expect = 3.2, Method: Composition-based stats. Identities = 15/24 (62%), Positives = 19/24 (79%) Query: 2 DFIVAKQRNGPIESVSLFVDMPYS 25 + I+AKQR+GPI SVSLF D Y+ Sbjct: 470 EVIIAKQRHGPIGSVSLFFDGNYT 493 >gi|225677331|ref|ZP_03788307.1| replicative DNA helicase [Wolbachia endosymbiont of Muscidifurax uniraptor] gi|225590632|gb|EEH11883.1| replicative DNA helicase [Wolbachia endosymbiont of Muscidifurax uniraptor] Length = 483 Score = 34.9 bits (79), Expect = 3.5, Method: Composition-based stats. Identities = 16/31 (51%), Positives = 19/31 (61%) Query: 2 DFIVAKQRNGPIESVSLFVDMPYSVIKDGKE 32 + I+AKQRNGPI SV L+ D KD E Sbjct: 449 ELIIAKQRNGPIGSVKLYFDSNRGSFKDYTE 479 >gi|99034809|ref|ZP_01314727.1| hypothetical protein Wendoof_01000447 [Wolbachia endosymbiont of Drosophila willistoni TSC#14030-0811.24] Length = 483 Score = 34.9 bits (79), Expect = 3.7, Method: Composition-based stats. Identities = 15/31 (48%), Positives = 19/31 (61%) Query: 2 DFIVAKQRNGPIESVSLFVDMPYSVIKDGKE 32 + ++AKQRNGPI SV L+ D KD E Sbjct: 449 ELVIAKQRNGPIGSVKLYFDSNRGAFKDYTE 479 >gi|42520234|ref|NP_966149.1| replicative DNA helicase [Wolbachia endosymbiont of Drosophila melanogaster] gi|42409972|gb|AAS14083.1| replicative DNA helicase [Wolbachia endosymbiont of Drosophila melanogaster] Length = 483 Score = 34.9 bits (79), Expect = 3.7, Method: Composition-based stats. Identities = 15/31 (48%), Positives = 19/31 (61%) Query: 2 DFIVAKQRNGPIESVSLFVDMPYSVIKDGKE 32 + ++AKQRNGPI SV L+ D KD E Sbjct: 449 ELVIAKQRNGPIGSVKLYFDSNRGAFKDYTE 479 >gi|189220414|ref|YP_001941054.1| Replicative DNA helicase [Methylacidiphilum infernorum V4] gi|189187272|gb|ACD84457.1| Replicative DNA helicase [Methylacidiphilum infernorum V4] Length = 472 Score = 34.2 bits (77), Expect = 6.3, Method: Composition-based stats. Identities = 12/25 (48%), Positives = 18/25 (72%) Query: 5 VAKQRNGPIESVSLFVDMPYSVIKD 29 VAKQRNGP + + +F + PY+ +D Sbjct: 437 VAKQRNGPTDKIEIFFNAPYTRFED 461 Database: nr Posted date: May 22, 2011 12:22 AM Number of letters in database: 999,999,966 Number of sequences in database: 2,987,313 Database: /data/usr2/db/fasta/nr.01 Posted date: May 22, 2011 12:30 AM Number of letters in database: 999,999,796 Number of sequences in database: 2,903,041 Database: /data/usr2/db/fasta/nr.02 Posted date: May 22, 2011 12:36 AM Number of letters in database: 999,999,281 Number of sequences in database: 2,904,016 Database: /data/usr2/db/fasta/nr.03 Posted date: May 22, 2011 12:41 AM Number of letters in database: 999,999,960 Number of sequences in database: 2,935,328 Database: /data/usr2/db/fasta/nr.04 Posted date: May 22, 2011 12:46 AM Number of letters in database: 842,794,627 Number of sequences in database: 2,394,679 Lambda K H 0.313 0.144 0.459 Lambda K H 0.267 0.0446 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 681,941,195 Number of Sequences: 14124377 Number of extensions: 13487173 Number of successful extensions: 27057 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 17 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 27040 Number of HSP's gapped (non-prelim): 17 length of query: 33 length of database: 4,842,793,630 effective HSP length: 8 effective length of query: 25 effective length of database: 4,729,798,614 effective search space: 118244965350 effective search space used: 118244965350 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.3 bits) S2: 76 (33.8 bits)